BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1444.p (215 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 174 5e-45 gi|152980124|ref|YP_001353267.1| sensory box protein [Janthinoba... 150 5e-38 gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [... 137 5e-34 gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [... 137 7e-34 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 136 1e-33 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 174 bits (440), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 86/160 (53%), Positives = 110/160 (68%) Query: 46 NASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLFLDLDGFKAVNDRLGHA 105 N L +QAL D+LT LPNR LLEDR+ + + +A REQ RFAL+F+DLDGFKA+ND LGH Sbjct: 256 NQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSLGHH 315 Query: 106 AGDLLLMQIGERLSESLRHADTIARIGGDEFVVLSEIVACGDITIIRDKLTQALTQPFPI 165 GDLLL+ + +R+ +++R DT AR+GGDEFV+L E+ D + DKL L QPF I Sbjct: 316 IGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIEVNEPEDAASVADKLCTTLNQPFDI 375 Query: 166 GPTSLNVSASLGHAHYPEDGLSMEALLARADQGMYHLKRT 205 +L +SAS+G A YPEDG + LL AD MYH K T Sbjct: 376 AQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKST 415 >gi|152980124|ref|YP_001353267.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 439 Score = 150 bits (380), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 104/165 (63%), Gaps = 1/165 (0%) Query: 43 KSVNASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLFLDLDGFKAVNDRL 102 + + A L+ A YD LT LPNR LL DR+ A+ +A RE+G +LLFLDLD FK VND L Sbjct: 262 QQMQARLQYMAQYDQLTTLPNRALLYDRLQVALLKARRERGCLSLLFLDLDKFKLVNDTL 321 Query: 103 GHAAGDLLLMQIGERLSESLRHADTIARIGGDEFVVLSEIVACG-DITIIRDKLTQALTQ 161 GH GD LL ++ RL + LR +DT+AR+GGDEFV+L +++ ++ +K+ QAL Sbjct: 322 GHHVGDQLLQEVARRLKQCLRESDTVARVGGDEFVILLQLIPLPQQAALVAEKIRQALQP 381 Query: 162 PFPIGPTSLNVSASLGHAHYPEDGLSMEALLARADQGMYHLKRTR 206 F I LN+ S+G AHYPE G LL ADQ MY K +R Sbjct: 382 AFNIDKHVLNIVPSIGIAHYPEHGEDEAQLLKHADQAMYQEKHSR 426 >gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [Janthinobacterium sp. Marseille] Length = 283 Score = 137 bits (345), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 107/175 (61%), Gaps = 1/175 (0%) Query: 30 RRCDRLDQQLADAKSVNASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLF 89 R D + LA A + + QA +D LTGL NR L + +S+ +A ER + ++L+ Sbjct: 96 READEVGTSLARASEMLHQAQHQANHDVLTGLANRALFHEIVSQQLALCERNKTVLSILY 155 Query: 90 LDLDGFKAVNDRLGHAAGDLLLMQIGERLSESLRHADTIARIGGDEFVVLSEIVACGDIT 149 +DLDGFKAVND+ GH AGD LL + RL + RH+D +AR+GGDEF ++ + Sbjct: 156 IDLDGFKAVNDKHGHEAGDKLLRAVASRLKTNSRHSDVVARLGGDEFAMVMVGAHMENAR 215 Query: 150 IIRDKLTQALTQPFPIGPT-SLNVSASLGHAHYPEDGLSMEALLARADQGMYHLK 203 + +K+ +A++ P+ + T + ++SAS+G A YPE G + EALL RAD MY K Sbjct: 216 FVAEKMVEAISAPYVLDDTLTSHISASIGVATYPESGTTSEALLHRADGAMYKAK 270 >gi|152982088|ref|YP_001354597.1| hypothetical protein mma_2907 [Janthinobacterium sp. Marseille] Length = 719 Score = 137 bits (344), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/168 (46%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Query: 39 LADAKSVNASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLFLDLDGFKAV 98 + + K + ASL AL D LT LPNR L R+ E+IARA R A+LFLDLDGFK V Sbjct: 543 ITERKLLQASLMGMALKDPLTDLPNRRALIQRLPESIARAARLGKPLAVLFLDLDGFKGV 602 Query: 99 NDRLGHAAGDLLLMQIGERLSESLRHADTIARIGGDEFVVLSEIV-ACGDITIIRDKLTQ 157 ND GH AGD LL I +RL ++R DT+AR+ GDEFV++ E++ D + DK+ Sbjct: 603 NDGYGHEAGDELLRTIAQRLLGAVRTTDTVARLAGDEFVIVLEMLNGDSDAMDVADKILH 662 Query: 158 ALTQPFPIGPTSLNVSASLGHA-HYPEDGLSMEALLARADQGMYHLKR 204 L QPF + ++ +SAS+G A H+PED + E L+ AD MY K+ Sbjct: 663 TLQQPFTLTAATVTISASIGIAMHWPEDHTTPEQLITLADGAMYAAKK 710 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 136 bits (342), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 99/165 (60%), Gaps = 1/165 (0%) Query: 42 AKSVNASLRQQALYDSLTGLPNRNLLEDRISEAIARAEREQGRFALLFLDLDGFKAVNDR 101 K + L Q D+LTGL NR+LL DR+S+AI+ A R + F+DLD FK VND Sbjct: 508 TKRYESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDT 567 Query: 102 LGHAAGDLLLMQIGERLSESLRHADTIARIGGDEFV-VLSEIVACGDITIIRDKLTQALT 160 LGH AGDLLL I ERL ++R DT++R+GGDEFV +L E V G T I ++ + Sbjct: 568 LGHQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIA 627 Query: 161 QPFPIGPTSLNVSASLGHAHYPEDGLSMEALLARADQGMYHLKRT 205 QP I +S+S+G A YP DG++ E L+ AD MY K T Sbjct: 628 QPLTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKET 672 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 404,800 Number of extensions: 14829 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 30 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 30 Length of query: 215 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 136 Effective length of database: 928,958 Effective search space: 126338288 Effective search space used: 126338288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)