BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1438.p (580 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 352 3e-98 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 352 3e-98 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 347 1e-96 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 340 1e-94 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 337 8e-94 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 352 bits (904), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 230/487 (47%), Positives = 308/487 (63%), Gaps = 37/487 (7%) Query: 103 NPAQQKRL-AEMLDLTDKIEEVDQMLMKLRKEANASASTQELQSYFGATHDKIYM---DR 158 N Q+K L A++LD+ + +MKL+ E + E YF D ++ D Sbjct: 108 NTDQEKELYAKILDVRKSFLAGREGVMKLKTEGKEA----EAAKYF----DTTFLPAADS 159 Query: 159 FRAVQQEFVQAEESLLSVRSELVHTLSQSTLWTLIGAGAVTILLAIGAGFTITRSILHAL 218 F+ EFV+ E + + + + ++ L+ A+ + I + +T I L Sbjct: 160 FKNHFTEFVELERKQMDAGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPL 219 Query: 219 GGEPAQAASVAQSIAAGDLTVAVALKPNDRTS-LMASLVSMKDQLTNIVRGIQASGESIT 277 A A+ +A GDLT + + D L+A+L M D L IV ++ E+IT Sbjct: 220 ----KTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETIT 275 Query: 278 VAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQANALAENASGLAV 337 A+ EIA GN DLS RTE+QA+SLEETASSME+LTSTV+QN+DNA+QAN LA +AS +A+ Sbjct: 276 TASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVAL 335 Query: 338 KGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAV 397 KGG+VVS+V+ TM+ I++SS K+ DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 336 KGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 395 Query: 398 VASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVRNVTDIMNE 457 VA+EVRSLAQRSA AAK++K LI S +V G +LV EAG T+ E+V ++R VTDIM E Sbjct: 396 VATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGE 455 Query: 458 ISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRAAVGVFKVA 517 I+AAS EQ+AGIEQ+NQA+ QMD VTQQNA+LVE+AAAAA++M +QA +L VG FK+ Sbjct: 456 ITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD 515 Query: 518 GTSQARVAPA----RVAPRPAPAPVAAAVTKPVLREAAPLPSPKKSEAVRTAASSSHKKA 573 +A A R+AP+PA AV AAPLP + + A+ A Sbjct: 516 NAQEANPPRASGVTRLAPKPAAGSAGLAV-------AAPLPQRRANGAL---------PA 559 Query: 574 DEEWETF 580 +EWE F Sbjct: 560 GDEWEQF 566 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 352 bits (904), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 263/595 (44%), Positives = 353/595 (59%), Gaps = 84/595 (14%) Query: 2 FSSLTVGRKLGLAFLVLVVVSLIGSSVSLFNFARLEEASGMNVHTYEVMGAADDMLLNMV 61 S+L +G +LGLAF V++ L+ +S+ + RL++ + VH E Sbjct: 3 ISNLKIGMRLGLAFAVIL---LLMASMIVVGVWRLQDVAQATVHMEE------------- 46 Query: 62 NVETGIRGYVASGNEAFLDPYKIGRKNFRTAFEKAKSLTADNPAQQKRLAEMLDLTDKIE 121 A+ E + +G N A A + +++ QK+ + ++L Sbjct: 47 ----------AAHKERLTHEWYLG--NVANAIRTAARIRSNDAEIQKQFQKEMELQS--- 91 Query: 122 EVDQMLMKLRKEANASASTQELQSYFGATHDK--IYMD----RFR--------------- 160 Q + KL+ E A ++E + +K YMD F+ Sbjct: 92 ---QEISKLQNEIVALIHSEEGKKLMSVVGEKRTAYMDIRKDVFKLKAEANAAADLAATK 148 Query: 161 ----------AVQQEFVQAEESLLSV---RSEL-VHTLSQSTLWTLIGAGAVTILLAIGA 206 A E VQA S V R++ V L S LI G++ ++L+ Sbjct: 149 LVETKMDPAMAAYNESVQAVVSFQQVIFQRAKADVDALYASGRTILITLGSIALILSAFL 208 Query: 207 GFTITRSILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRT-SLMASLVSMKDQLTNI 265 + ++RSI L A SVA+++A+GDL + ND T L+ +L M D L Sbjct: 209 AWLLSRSITRPLD----YAVSVARTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQS 264 Query: 266 VRGIQASGESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQA 325 V ++ E+I A+ +IA GN DLS RTEEQA+SLEETASSME+LTSTV+QN+DNA+QA Sbjct: 265 VSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQA 324 Query: 326 NALAENASGLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEA 385 N LA +ASG+A KGGEVVSRV+DTM +I+ S+ K+ DII VI+GIAFQTNILALNAAVEA Sbjct: 325 NQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEA 384 Query: 386 ARAGEQGRGFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVV 445 ARAGEQGRGFAVVASEVR+LAQRSA AAK++K LI S ++V G++LVGEAG T+ EVV Sbjct: 385 ARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVV 444 Query: 446 QAVRNVTDIMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAV 505 Q+V++VTDIM+EI AAS EQ+AGIEQVNQA+ QMDQVTQQNAALVE+AAAAA++++EQA Sbjct: 445 QSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAA 504 Query: 506 ELRAAVGVFKVAGTSQARVAPA-------RVAPRPAPA--PVAAAVTKPVLREAA 551 +L AV VFK+ + A AP+ RVA APA +A VTK + AA Sbjct: 505 KLAEAVSVFKLDSITAA-AAPSKKVNVGTRVASHGAPANRAIAVPVTKKISNGAA 558 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 347 bits (890), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 221/430 (51%), Positives = 295/430 (68%), Gaps = 23/430 (5%) Query: 160 RAVQQEFVQAEESLLSVRSELVHTLSQ------STLWTLIGA-GAVTILLAIGAGFTITR 212 R Q E++ + L+ +S L+H + + L+G + ++++ GF TR Sbjct: 151 RPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATR 210 Query: 213 SILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRTS-LMASLVSMKDQLTNIVRGIQA 271 SI L +QA +A+ +A GDLT + + D T L+ +L M + L IV ++ Sbjct: 211 SITRPL----SQAVGLARKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRM 266 Query: 272 SGESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTVRQNSDNAKQANALAEN 331 ++I A+ +IATGN DLS RTEEQA+SLEETASSME+LTSTV+QN+DNA+Q+N LA Sbjct: 267 GTDTIATASSQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALT 326 Query: 332 ASGLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQ 391 AS +AV+GG VVS+V++TM I+DS++K+ DII VI+GIAFQTNILALNAAVEAARAGEQ Sbjct: 327 ASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 386 Query: 392 GRGFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVGEAGKTIGEVVQAVRNV 451 GRGFAVVASEVR+LAQRSA AAK++K LI S E+V G++LV +AG T+ EVV++VR V Sbjct: 387 GRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRV 446 Query: 452 TDIMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAAAAQAMSEQAVELRAAV 511 TDIM EI+AAS EQT GIEQ+NQA++QMDQVTQQNAALVE+AAAAA+++ +QA L V Sbjct: 447 TDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVV 506 Query: 512 GVFKVAGTSQARVAPARVAPRPAPAPVAAAVTKPVLREAAPLPSPK-KSEAVRTAASSSH 570 VFK+ + A A +RVA APA ++PV + A + S + VR AS++ Sbjct: 507 SVFKLDANAVALQATSRVA---APA------SRPVSKPAQQIRSANVDKQIVRQRASATA 557 Query: 571 KKADEEWETF 580 D EWE F Sbjct: 558 GDGD-EWEQF 566 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 340 bits (872), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 206/370 (55%), Positives = 268/370 (72%), Gaps = 9/370 (2%) Query: 198 VTILLAIGAGFTITRSILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRTS-LMASLV 256 V +LL+IG G I+RSI L +A VAQ++A+GDLT + +K D T L+ +L Sbjct: 194 VALLLSIGLGIVISRSITRPLN----EAVLVAQTVASGDLTSQINVKSKDETGQLLQALK 249 Query: 257 SMKDQLTNIVRGIQASGESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQLTSTVR 316 M L IV +++ ++ A+ +IA+GN DLS RTEEQA+SLEETASSME+LTSTV+ Sbjct: 250 DMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVK 309 Query: 317 QNSDNAKQANALAENASGLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNI 376 QN+DNA+QAN+L+ +AS +AVKGG+VVS V+ TMN I+DS+ K++DII VI+GIAFQTNI Sbjct: 310 QNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNI 369 Query: 377 LALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRGTQLVGE 436 LALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAK++K LI S RV G++LV + Sbjct: 370 LALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQ 429 Query: 437 AGKTIGEVVQAVRNVTDIMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALVEQAAAA 496 AG T+ EVV +V+ VTDIM EI AAS EQ+AGIEQVNQA+ QMD VTQQNAALVE+AAAA Sbjct: 430 AGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAA 489 Query: 497 AQAMSEQAVELRAAVGVFKVAGTSQARVAPARVAPRPAPA-PVAAAVTKPVLREAAPLPS 555 A ++ +QAV+L V VFK+ ++ + + R P P A+ + R +P Sbjct: 490 AGSLKDQAVKLEQTVSVFKIDASAPQQTEHQDTSVRSTPVRPALASKLSSIKRAVSP--- 546 Query: 556 PKKSEAVRTA 565 P++ V +A Sbjct: 547 PRRLAVVASA 556 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 337 bits (865), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 210/390 (53%), Positives = 268/390 (68%), Gaps = 15/390 (3%) Query: 197 AVTILLAIGA-----GFTITRSILHALGGEPAQAASVAQSIAAGDLTVAVALKPNDRTS- 250 A+ +++ +GA G + I H++ +A +AQ++AAGDLT + K D T Sbjct: 188 AIQMMMVLGALAAVGGIALAYWITHSITKPLHEAVKIAQTVAAGDLTSVIEAKYKDETGQ 247 Query: 251 LMASLVSMKDQLTNIVRGIQASGESITVAAGEIATGNTDLSQRTEEQAASLEETASSMEQ 310 L+ +L M L IV ++ S E+I +A+ +IA+GN DLS RTEEQA+SLEETASSME+ Sbjct: 248 LLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLEETASSMEE 307 Query: 311 LTSTVRQNSDNAKQANALAENASGLAVKGGEVVSRVIDTMNEISDSSSKVSDIITVIEGI 370 LT TVRQN+DNA+QAN LA AS +A KGG+VVS+V+DTM I+DS+ K++DII VI+GI Sbjct: 308 LTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIADIIGVIDGI 367 Query: 371 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKDVKDLITLSTERVGRG 430 AFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAK++K LI S ++V G Sbjct: 368 AFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGDSVQKVNAG 427 Query: 431 TQLVGEAGKTIGEVVQAVRNVTDIMNEISAASSEQTAGIEQVNQALVQMDQVTQQNAALV 490 ++LV +AG T+ EVV +VR VTDIM EI+AAS EQT GIEQ+NQA++QMD VTQQNAALV Sbjct: 428 SRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSVTQQNAALV 487 Query: 491 EQAAAAAQAMSEQAVELRAAVGVFKVAGTSQARVAPARVAPRPAPAPVAAAVTKPVLREA 550 EQAAAAA ++ QA L VGVFK+ + V PA + P AA + + +A Sbjct: 488 EQAAAAAASLQHQAGSLAQVVGVFKLHHSEALHVLPATPKATVSVLPQKAAAVQ-IANKA 546 Query: 551 APLPSPKKSEAVRTAASSSHKKADEEWETF 580 P P K + A +EWE F Sbjct: 547 VPPPKEGKRPELAVAG--------DEWEQF 568 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.124 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 906,804 Number of extensions: 29470 Number of successful extensions: 258 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 21 Length of query: 580 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 492 Effective length of database: 895,685 Effective search space: 440677020 Effective search space used: 440677020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)