BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1436.p
         (721 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981258|ref|YP_001355221.1| outer membrane receptor [Janthi...    56   9e-09

>gi|152981258|ref|YP_001355221.1| outer membrane receptor
           [Janthinobacterium sp. Marseille]
          Length = 718

 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 417 EVGVYLQDEWKISDALTLNYGARFDKLNAYVTGSQLSPRIGMVYQLNERTTLHAGYARYF 476
           ++GV+ +DEW+I   L L  G R D  + +  G   +PR+ +V+   ++ T   G ++ +
Sbjct: 415 QIGVFAEDEWRIRKDLALTVGVRHDNHSTF--GGATTPRMYLVWNATDQWTFKGGVSKAY 472

Query: 477 TPPTSELIPASTINNFANT--TGAPPTNGNDAVQPERSNTYDLG 518
             P  E +    +N  +     G  P  GN A+QPERS + +LG
Sbjct: 473 RTPGLEQL----VNGLSGIGGQGTIPLYGNPALQPERSVSSELG 512


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,746,398
Number of extensions: 77995
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 631
Effective length of database: 888,291
Effective search space: 560511621
Effective search space used: 560511621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 133 (55.8 bits)