BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1429.p (214 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981623|ref|YP_001352308.1| positive response regulator for... 103 8e-24 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 92 3e-20 gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 85 3e-18 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 83 1e-17 gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding respons... 77 6e-16 >gi|152981623|ref|YP_001352308.1| positive response regulator for colanic capsule biosynthesis [Janthinobacterium sp. Marseille] Length = 216 Score = 103 bits (257), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 102/202 (50%), Gaps = 3/202 (1%) Query: 5 VAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAF-DDDPQ 63 V +ADD+P++L G+ ++ L + S T L++ + A D+++ DY+ D+ Sbjct: 6 VILADDHPLILMGLRDLVEKDASFELLGAVSSSTALVSLMRDAEPDMVITDYSMPGDETY 65 Query: 64 ADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIYCV 123 DGI ++K L RH P K++ ++ + P IIS+ + G I KS D A++ + Sbjct: 66 GDGIRMIKYLIRHFPNTKILTMTMMSNPMIISALYDAGVYAVIRKS-DDPAEFIAALHIL 124 Query: 124 QNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKRSP 183 + G+ Y P S N R + LS +E V R QG I +A L RS Sbjct: 125 RLGRKYYPPSFQKESKAN-ERTKFIGERINSLSPKEFEVLRYFIQGKPIMQVALHLNRSI 183 Query: 184 KTISNQKVAAMKKLGVSNDVEL 205 KT+S QK+AAM KL V D EL Sbjct: 184 KTVSGQKIAAMHKLNVKTDQEL 205 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 91.7 bits (226), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 110/206 (53%), Gaps = 7/206 (3%) Query: 2 MIRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDD 61 +I+V IADD+ +V G++ ILA DI +A AE+ + + + A VLL D + Sbjct: 6 VIKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDISM--- 62 Query: 62 PQADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIY 121 P GI++LK++++ P + V+ LS H + +L+ GA G++ K +S L AI Sbjct: 63 PDRSGIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNK-QSAPAELVNAIR 121 Query: 122 CVQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQ-LSERELTVARMICQGMSIGTIAERLK 180 V G+ Y+ +L+ L + H ++ L + LS+RE MI G ++ IA L Sbjct: 122 QVAAGRKYISAALAQELANQISDDH--ETPLHETLSDREYQTLTMIASGKTVSDIANELV 179 Query: 181 RSPKTISNQKVAAMKKLGVSNDVELS 206 S KTIS + ++K+ + ++ EL+ Sbjct: 180 LSVKTISMYRSRLLQKMKLRHNAELT 205 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 85.1 bits (209), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 9/203 (4%) Query: 2 MIRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDD 61 MI++ + DD+ VV G++ +A PD+ + A + + + + D++L D Sbjct: 1 MIKILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINM--- 57 Query: 62 PQADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKS--RSDFVNLPQA 119 P G+++LK+++R P + V+ LS H + L GA G++ K + VN A Sbjct: 58 PDKSGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVN---A 114 Query: 120 IYCVQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERL 179 I + G Y+ +++ L L T + LS+RE + +CQG + IA+ L Sbjct: 115 IQTILRGHKYISHTVAELLTTEL-DTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADEL 173 Query: 180 KRSPKTISNQKVAAMKKLGVSND 202 S KT+S + ++K+ + N+ Sbjct: 174 CLSVKTVSTYRARVLQKMNMENN 196 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 83.2 bits (204), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 105/204 (51%), Gaps = 5/204 (2%) Query: 2 MIRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDD 61 MI++ IADD+ ++ G++ I++ ++ +A A + +++ L VDVL+ D + Sbjct: 1 MIQILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSLQVDVLVLDMSM--- 57 Query: 62 PQADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIY 121 P GI L++++ P + ++ LS H + A+ GA G+I K+ + L + I Sbjct: 58 PGRSGIALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTAS-SQLIEGIR 116 Query: 122 CVQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKR 181 V G ++ +S+ L+ L++ T +L+ RE + M+ +G S+ IA+ L Sbjct: 117 KVAEGGTFVSPEISAKLIKQLHKPETDLPHT-KLTAREFQIFSMLVEGHSVNDIAKILSL 175 Query: 182 SPKTISNQKVAAMKKLGVSNDVEL 205 S KTIS K A ++K+ S L Sbjct: 176 SNKTISTHKAAVLQKMEASTTASL 199 >gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 213 Score = 77.4 bits (189), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 25/217 (11%) Query: 2 MIRVAIADDYPVVLRGIEAILA---PCPDITLAFSAESITQLMACLEQAAVDVLLCDYAF 58 M V + DD+ + G+ L P I S QL+ + ++ + DY Sbjct: 1 MSSVLLIDDHAMFREGLTLALTQADPTLQIHCVASGNEALQLLET--ETSISTAMMDYYL 58 Query: 59 DDDPQADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQ 118 P G LL+RLR+ P ++++ LSA P + AL GA GFI KS +D L Sbjct: 59 ---PDIGGGALLQRLRQLRPGLRILALSASEDPDDVRHALASGAHGFIHKS-ADSKTLFA 114 Query: 119 AIYCVQNGQVYLPQSLSSALLGNLYRVHTRQSG-------LGQLSERELTVARMICQGMS 171 A+ V G+ YLP + +++ T G L +L+ R++ V R++C G+ Sbjct: 115 ALSSVMQGRGYLPPT---------FKLDTHDGGSNDDASLLSRLTPRQMEVLRLMCDGLR 165 Query: 172 IGTIAERLKRSPKTISNQKVAAMKKLGVSNDVELSRV 208 G IA++L + KT+ A + LGV N + + V Sbjct: 166 NGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQATVV 202 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 449,116 Number of extensions: 17062 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 8 Length of query: 214 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 135 Effective length of database: 928,958 Effective search space: 125409330 Effective search space used: 125409330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)