BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1382.p (660 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthino... 1165 0.0 gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janth... 419 e-118 gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas... 91 2e-19 >gi|152980721|ref|YP_001352572.1| acetyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 664 Score = 1165 bits (3014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/660 (82%), Positives = 602/660 (91%) Query: 1 VADIETFKQENRVFAPPAELAKHAAISGMDAYHALNAEFANDYEGTWARLAKDNLKWHKP 60 ++ IE+FKQE RVF PP + +AAISGMDAY+AL E A DYEG WARLA+ N+ W KP Sbjct: 5 MSSIESFKQEERVFNPPVDFVNNAAISGMDAYNALCTEAAEDYEGFWARLAQQNVLWSKP 64 Query: 61 FTQTLDESNAPFYKWFADGQVNVSYNCLDVNLENGNADKTAIIFESDDGQVTRVSYRELH 120 FT+ LDESNAPFYKWF DG++NVSYNCLD +L NGNADK A+IFESDDG+VTRV+Y+EL+ Sbjct: 65 FTKRLDESNAPFYKWFEDGELNVSYNCLDRHLTNGNADKVALIFESDDGKVTRVTYKELY 124 Query: 121 QKVCQFANGLKSLGIKKGDRVVIYMPMSVEGVAAMQACARIGATHSVVFGGFSAKSLHER 180 ++VC+FANGLK LGI+KGDRV+IYMPMS+EGVAAMQACARIGATHSVVFGGFSAKSL ER Sbjct: 125 ERVCKFANGLKELGIQKGDRVIIYMPMSIEGVAAMQACARIGATHSVVFGGFSAKSLQER 184 Query: 181 VIDAGAVAVVTADYQVRGGKQLPLKSIVDEALAMGGCDTLKQVIVYKRTGAELNWVEGRD 240 +IDAGAVAV+T+DYQVRGGK LPLKSIVDEALA+GGCDT++ V+VYKRTG E+N+V GRD Sbjct: 185 IIDAGAVAVLTSDYQVRGGKNLPLKSIVDEALALGGCDTIRNVVVYKRTGGEMNFVAGRD 244 Query: 241 LWLSDVMANQAATCEPEWVDAEHPLFILYTSGSTGKPKGVQHASAGYLLWAVLTMKWTFD 300 +WL D++ Q A CEP V AEHPLFILYTSGSTGKPKGVQH+S GYLLWA+LTMKW+FD Sbjct: 245 IWLHDLVDKQKAECEPVPVGAEHPLFILYTSGSTGKPKGVQHSSGGYLLWAMLTMKWSFD 304 Query: 301 IKPDDVYWCTADIGWITGHTYIAYGPLAVGATQIVFEGVPTYPNAGRFWDMVARHKATIF 360 IKP+DVYWCTADIGWITGHTY+ YGPLA GATQIVFEGVP +PNAGRFWDMV +HK TIF Sbjct: 305 IKPNDVYWCTADIGWITGHTYVTYGPLACGATQIVFEGVPMFPNAGRFWDMVQKHKVTIF 364 Query: 361 YTAPTAIRSLIKAADADEKVHPKQYDLSTLRILGSVGEPINPEAWMWYYKNVGRENCPIV 420 YTAPTAIRSLIKAADAD VHP +YDLS+LR+LGSVGEPINPEAWMWYYKN+G E CPI Sbjct: 365 YTAPTAIRSLIKAADADPAVHPSKYDLSSLRLLGSVGEPINPEAWMWYYKNIGGERCPIA 424 Query: 421 DTFWQTETGGHMISPLPGATPQVPGSCTLPLPGITAAIVDETGHDLPNGNGGILVVKRPW 480 DTFWQTETGGH+ISP+PGATP VPGSCTLPLPGI AA+VDE GHDL NG GG+LV+KRPW Sbjct: 425 DTFWQTETGGHVISPMPGATPMVPGSCTLPLPGIAAAVVDEVGHDLANGKGGLLVIKRPW 484 Query: 481 PSMIRTIWNDPERFKKSYFPEELGGNIYLAGDGAVRNKETGYFTITGRIDDVLNVSGHRM 540 PSMIR IWNDPERF+KSYFP ELGG IYLAGDGA+RN+ETGYFTITGRIDDVLN+SGHRM Sbjct: 485 PSMIRNIWNDPERFQKSYFPHELGGTIYLAGDGAIRNEETGYFTITGRIDDVLNISGHRM 544 Query: 541 GTMEIESALVANSIVAEAAVVGKPDETTGESICAFVVLKRPRPTGEEAKQIAKELRDWVA 600 GTMEIESALVAN IVAEAAVVGKPDETTGESICAFVVLKR RPTG+EAKQIAKELRDWVA Sbjct: 545 GTMEIESALVANPIVAEAAVVGKPDETTGESICAFVVLKRSRPTGDEAKQIAKELRDWVA 604 Query: 601 KEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLRVLAKGEAITQDVSTLENPAILDQLKEAQ 660 KEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLRVLAK E ITQD+STLENPAIL+QLK+AQ Sbjct: 605 KEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLRVLAKDEVITQDISTLENPAILEQLKQAQ 664 >gi|152980534|ref|YP_001355180.1| propionyl-CoA synthetase [Janthinobacterium sp. Marseille] Length = 634 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 244/636 (38%), Positives = 368/636 (57%), Gaps = 21/636 (3%) Query: 31 AYHALNAEFANDYEGTWARLAKDNLKWHKPFTQTLDESNAPFYKWFADGQVNVSYNCLDV 90 AY A +D WA AK + WHKPF++TLD PF KWF G+ N+ YN +D Sbjct: 7 AYDAFYRLSVDDPHSFWATQAK-RIDWHKPFSKTLDYDKPPFAKWFVGGETNLCYNAVDR 65 Query: 91 NLENGNADKTAII-FESDDGQVTRVSYRELHQKVCQFANGLKSLGIKKGDRVVIYMPMSV 149 +L AD+ A++ ++ T +Y +LH +V + A +++LG+ +GDRV+IYMPM Sbjct: 66 HLAT-RADQPALVAISTETDTETTYTYAQLHAEVSRSAAMMQALGVGQGDRVLIYMPMVA 124 Query: 150 EGVAAMQACARIGATHSVVFGGFSAKSLHERVIDAGAVAVVTADYQVRGGKQLPLKSIVD 209 E AM ACARIGA HSVVFGGF++ SL R+ DA V +++AD RG P K ++D Sbjct: 125 EAAFAMLACARIGAIHSVVFGGFASTSLATRIDDATPVLIISADAGSRGCHVTPYKCLLD 184 Query: 210 EALAMGGCDTLKQVIVYKRTGAELNWVEGRDLWLSDVMANQAATCEP-EWVDAEHPLFIL 268 EA+A+ V++ R A + +EGRD+ + + P W+++ P +IL Sbjct: 185 EAIALAEHKP-AHVLMLDRGLAPMKTIEGRDVDYATLRRQHMDAVVPVAWLESNAPSYIL 243 Query: 269 YTSGSTGKPKGVQHASAGYLLWAVLTMKWTFDIKPDDVYWCTADIGWITGHTYIAYGPLA 328 YTSG+TGKPKGV GY + +M F KP + ++CT+DIGW+ GH+YI YGPL Sbjct: 244 YTSGTTGKPKGVLRDVGGYAVALATSMDLIFCGKPGETFFCTSDIGWVVGHSYIIYGPLL 303 Query: 329 VGATQIVFEGVPTYPNAGRFWDMVARHKATIFYTAPTAIRSLIKAADADEKVHPKQYDLS 388 G T I++EG+P P+A +W +V ++K T +APTAIR L K + H DLS Sbjct: 304 AGMTTILYEGLPIRPDASIWWSIVEKYKVTRMSSAPTAIRVLKKQPLELLQKH----DLS 359 Query: 389 TLRILGSVGEPINPEAWMWYYKNVGRENCPIVDTFWQTETGGHMISPLPGA--TPQVPGS 446 +L+ L GEP++ W +G P++D +WQTETG +IS G P GS Sbjct: 360 SLKALYLAGEPLDQTTSDWISGVLG---VPVIDNYWQTETGWPIISVAKGVGDKPTRSGS 416 Query: 447 CTLPLPGITAAIV-DETGHDLPNGNGGILVVKRPW-PSMIRTIWNDPERFKKSYFPEELG 504 P+ G A ++ +ETG + G+++++ P P ++T++ D +RF +Y+ Sbjct: 417 PGQPMYGYKAKVINEETGEECAPNEKGVVIIEGPLPPGCLQTLYGDDQRFVSTYW-RNFK 475 Query: 505 GNIYLAGDGAVRNKETGYFTITGRIDDVLNVSGHRMGTMEIESALVANSIVAEAAVVGKP 564 Y D +R+ + GY+ I GR DDV+NV+GHR+GT EIE ++ +++ V+E AVVG Sbjct: 476 REAYSTFDWGIRDAD-GYYFILGRTDDVINVAGHRLGTREIEESISSHANVSEVAVVGVE 534 Query: 565 DETTGESICAFVVLKRPRPTG--EEAKQIAKELRDWVAKEIGPIAKPKEIRFGDNLPKTR 622 + G+ AFV+LK +EA+++ E+ V K +GPI +P + F LPKTR Sbjct: 535 NPIKGQCAVAFVILKNAAAAADPDEARKLEAEIMKVVDKRLGPIGRPSHVYFVSALPKTR 594 Query: 623 SGKIMRRLLRVLAKGEAITQDVSTLENPAILDQLKE 658 SGK++RR ++ + +G D+S +E+PA L Q++ Sbjct: 595 SGKLLRRSIQAICEGRD-PGDLSVIEDPAALQQIRS 629 >gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase [Janthinobacterium sp. Marseille] Length = 560 Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 15/216 (6%) Query: 417 CPIVDTFWQTETGGHMISPLPGATPQVPGSCTLPLPGITAAIVDETGHDLPNGNGGILVV 476 C I + + +ET + P T + G+ LP+ I+D +++P+G+ G + + Sbjct: 354 CAICEGYGLSETSPTATAN-PPTTNEFTGTIGLPVSSTELKIIDSDDNEVPHGSAGEIAI 412 Query: 477 KRPWPSMIRTIWNDPERFKKSYFPEELGGNIYLAGDGAVRNKETGYFTITGRIDDVLNVS 536 + P ++ WN+P +S + + GD + + E G+ I R D++ VS Sbjct: 413 R--GPQVMAGYWNNPVETAQSMTAD----GFFKTGDIGIMD-ERGFTKIVDRKKDMILVS 465 Query: 537 GHRMGTMEIESALVANSIVAEAAVVGKPDETTGESICAFVVLKRPRPTGEEAKQIAKELR 596 G + EIE + A+ V E A +G PDE TGE++ FVV + P T EL Sbjct: 466 GFNVYPSEIEGVVAAHPGVLECACIGVPDEHTGEAVKLFVVRRDPALT-------EAELM 518 Query: 597 DWVAKEIGPIAKPKEIRFGDNLPKTRSGKIMRRLLR 632 + ++ KPK I F LPK+ GKI+RR LR Sbjct: 519 AYCREQFTGYKKPKSIEFRTELPKSNVGKILRRELR 554 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,704,295 Number of extensions: 77761 Number of successful extensions: 205 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 3 Length of query: 660 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 571 Effective length of database: 891,988 Effective search space: 509325148 Effective search space used: 509325148 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)