BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1381.p
         (206 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981684|ref|YP_001352571.1| hypothetical protein mma_0881 [...   312   9e-87

>gi|152981684|ref|YP_001352571.1| hypothetical protein mma_0881
           [Janthinobacterium sp. Marseille]
          Length = 220

 Score =  312 bits (800), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 154/187 (82%), Positives = 164/187 (87%), Gaps = 5/187 (2%)

Query: 6   PQPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGSASSLDHI 65
           P PP     L   IFM+RWLQLPLYLGLILAQCVYV+HFWVEL DLIGA +G+  SL HI
Sbjct: 29  PIPP-----LARFIFMTRWLQLPLYLGLILAQCVYVFHFWVELSDLIGAVLGNPDSLQHI 83

Query: 66  LDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEGHPDQ 125
           LDAVAIPGA++P KLNE TIMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNLE HPDQ
Sbjct: 84  LDAVAIPGAVKPSKLNETTIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNLESHPDQ 143

Query: 126 PEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLLSAMAI 185
           PEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ YD KTL+AQTGIHI FL SAMAI
Sbjct: 144 PEWLSHVNASVLKVKLATAIIGISSIHLLKTFINASAYDTKTLLAQTGIHIVFLFSAMAI 203

Query: 186 AYCDRLM 192
           AY DR+M
Sbjct: 204 AYSDRIM 210


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 476,840
Number of extensions: 17728
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 127
Effective length of database: 928,958
Effective search space: 117977666
Effective search space used: 117977666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)