BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1380.p
         (513 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980967|ref|YP_001352570.1| fumarate hydratase, class I [Ja...   954   0.0  

>gi|152980967|ref|YP_001352570.1| fumarate hydratase, class I
           [Janthinobacterium sp. Marseille]
          Length = 512

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/511 (88%), Positives = 485/511 (94%), Gaps = 1/511 (0%)

Query: 1   MTIIKQDDLIESVAAALQYISYYHPADYIAHLARAYETEQSPAAKDAIAQILTNSRMCAE 60
           MTIIKQDDLIESVAAALQYISYYHP DYI HLARAYE EQSPAAKDAIAQILTNSRMCAE
Sbjct: 1   MTIIKQDDLIESVAAALQYISYYHPQDYIQHLARAYEAEQSPAAKDAIAQILTNSRMCAE 60

Query: 61  GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120
           GKRP+CQDTGIVNVFLK+GMGVRFEGFSGS+ DAVNEGVR+ Y+HPDN LRASIVADP F
Sbjct: 61  GKRPLCQDTGIVNVFLKVGMGVRFEGFSGSVTDAVNEGVRQAYNHPDNTLRASIVADPHF 120

Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180
           ERKNTKDNTPAV+H+ELVPGNTVDVQ+AAKGGGSENKTKFVMLNPSD+LVDWV++TVP M
Sbjct: 121 ERKNTKDNTPAVVHVELVPGNTVDVQVAAKGGGSENKTKFVMLNPSDSLVDWVMQTVPLM 180

Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240
           GAGWCPPGMLGIGIGGTAE+AMLMAK+VLMEDIDMYEL KRGPQNKTEELRIEL +K+N+
Sbjct: 181 GAGWCPPGMLGIGIGGTAERAMLMAKQVLMEDIDMYELKKRGPQNKTEELRIELCDKINS 240

Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300
           LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRH HFVLDGSGP Y++PP+L
Sbjct: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHAHFVLDGSGPVYLDPPAL 300

Query: 301 SDWPQVQWVADTEKSKRVDLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360
           SDWP+V W+ DTE+SKRVDL+TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK
Sbjct: 301 SDWPKVNWMPDTEQSKRVDLNTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360

Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420
           GEKLPVDFTNR+IYYVGPVDPVRDEVVGPAGPTTATRMDKFT+MML QTGLISM+GK+ER
Sbjct: 361 GEKLPVDFTNRIIYYVGPVDPVRDEVVGPAGPTTATRMDKFTEMMLAQTGLISMVGKAER 420

Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFEVKDMPVTVAV 480
           GP AIEAIKKHKSAYLMAVGG+AYLVSKAIK AKVLGF DLGMEAIYEF+V+DMPVTVAV
Sbjct: 421 GPTAIEAIKKHKSAYLMAVGGAAYLVSKAIKKAKVLGFEDLGMEAIYEFDVQDMPVTVAV 480

Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPVT 511
           D+ G SVH TGP EWKEKI + + L+ IPV+
Sbjct: 481 DSTGTSVHTTGPKEWKEKI-EKIRLNDIPVS 510


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,194,765
Number of extensions: 49834
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 426
Effective length of database: 899,382
Effective search space: 383136732
Effective search space used: 383136732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)