BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1379.p
         (297 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980748|ref|YP_001352569.1| glutamate racemase [Janthinobac...   312   1e-86

>gi|152980748|ref|YP_001352569.1| glutamate racemase
           [Janthinobacterium sp. Marseille]
          Length = 284

 Score =  312 bits (800), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 163/278 (58%), Positives = 197/278 (70%), Gaps = 1/278 (0%)

Query: 21  PMPTAADAAVGIFDSGVGGLSVLQHIHAALPREQLLYFADAGYAPYGEKTDEQIVERSLT 80
           P P AADA +GIFDSGVG LSVL+HI A LP E LL FAD+GYAPYG K+D  I+ER+L 
Sbjct: 7   PDPVAADAPIGIFDSGVGALSVLRHIQARLPSEHLLCFADSGYAPYGGKSDAAIIERTLD 66

Query: 81  IASFLIDQRIKALVVACNTATAAAIQAIRVHWPQLPVVGIEPGLKPAAQQTRCAIVGVLA 140
           IA+FL  + IKA+VVACNTATAAAI+A+R H+PQL +VG+EPGLKPAA  ++    GVLA
Sbjct: 67  IAAFLTTKNIKAIVVACNTATAAAIEALRQHYPQLIIVGVEPGLKPAAVFSKSGKAGVLA 126

Query: 141 TRSTLASKRFALLQAQMEAQYRVRYLPQACVGLVDLIEKGELYSPATVQLLERYLTPLLE 200
           T STLAS RF  L+ Q+     + +L QACVGLV+ IEKGEL S  T+ +LERY+TPLL 
Sbjct: 127 TASTLASSRFIALRDQISTSTGITFLTQACVGLVEQIEKGELDSTETIAMLERYVTPLLR 186

Query: 201 QGADTLVLGCTHYPFVRPAIESVCQRLVGAVPDIIDTGQAVTRQLQRLLETDAL-LTQAA 259
            GADTL LGCTHYPFV+PAIE + QR       IIDTG+AV+RQL+RLL+   L   +  
Sbjct: 187 GGADTLALGCTHYPFVQPAIEVIAQRESAVPVTIIDTGEAVSRQLERLLQQRGLQRFETT 246

Query: 260 TGSLAGFTTSSRSTLEQAFRGLLKLDPPVQALQPQAGA 297
            GSL  FTT +R  L  AF  LL   P V  +  +  A
Sbjct: 247 AGSLQAFTTGNRDALVAAFAKLLNQHPSVTEMPAKTAA 284


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 640,134
Number of extensions: 24805
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 214
Effective length of database: 914,170
Effective search space: 195632380
Effective search space used: 195632380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)