BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1378.p (221 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981623|ref|YP_001352308.1| positive response regulator for... 119 2e-28 gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding respons... 83 1e-17 gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding respons... 82 2e-17 gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding respons... 70 9e-14 gi|152983037|ref|YP_001352599.1| two-component response regulato... 69 2e-13 >gi|152981623|ref|YP_001352308.1| positive response regulator for colanic capsule biosynthesis [Janthinobacterium sp. Marseille] Length = 216 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 119/216 (55%), Gaps = 8/216 (3%) Query: 9 VAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPADDSD 68 V +ADDHP++L LR + + + V + AL+S ++ + ++VITD++MP D++ Sbjct: 6 VILADDHPLILMGLRDLVEKDASFELLGAVSSSTALVSLMRDAEPDMVITDYSMPGDET- 64 Query: 69 ESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINACLAT 128 DG ++K L P+TK++ T M+N +I LY GV+AVI K + E I A Sbjct: 65 YGDGIRMIKYLIRHFPNTKILTMTMMSNPMIISALYDAGVYAVIRKSDDPAEFIAALHIL 124 Query: 129 QSSKQLYFPVSLRGEL---EMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICERLS 185 + ++ Y+P S + E E + GE + L+ E EV+R F++G+ + ++ L+ Sbjct: 125 RLGRK-YYPPSFQKESKANERTKFIGER---INSLSPKEFEVLRYFIQGKPIMQVALHLN 180 Query: 186 RTPSTISTHKNNAMRKLGLSTDADLIKYAYSTGMIN 221 R+ T+S K AM KL + TD +LI + TG+ Sbjct: 181 RSIKTVSGQKIAAMHKLNVKTDQELIAFCLETGLFQ 216 >gi|152981438|ref|YP_001353142.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 215 Score = 83.2 bits (204), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 6/221 (2%) Query: 1 MNLKKVLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDF 60 M K V+ V IADDH IV L+ LA +I + ENG I + C++++ D Sbjct: 1 MTTKNVIKVLIADDHAIVREGLKQILADTKDIVVAGHAENGIEAIKLSREGACQVLLLDI 60 Query: 61 AMPADDSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDE 120 +MP + G ++K++K E P V++ + R + G +NK+ E Sbjct: 61 SMP-----DRSGIEVLKQVKKESPKIAVLMLSMHREDQYAIRSLKAGASGYLNKQSAPAE 115 Query: 121 LINACLATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEI 180 L+NA + ++ Y +L EL + L L+ E + + + G+++ +I Sbjct: 116 LVNAIRQVAAGRK-YISAALAQELANQISDDHETPLHETLSDREYQTLTMIASGKTVSDI 174 Query: 181 CERLSRTPSTISTHKNNAMRKLGLSTDADLIKYAYSTGMIN 221 L + TIS +++ ++K+ L +A+L YA +++ Sbjct: 175 ANELVLSVKTISMYRSRLLQKMKLRHNAELTHYAIKNHLVD 215 >gi|152981412|ref|YP_001354606.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 214 Score = 82.4 bits (202), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 6/216 (2%) Query: 6 VLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPAD 65 ++ + IADDH I+ L+ ++ + + + E NGE ++ L+ ++++ D +MP Sbjct: 1 MIQILIADDHAIIRDGLKQIISFVSNMAVAGEASNGEEVLQKLRSLQVDVLVLDMSMPG- 59 Query: 66 DSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINAC 125 G AL++++ P ++V + + R G I K + +LI Sbjct: 60 ----RSGIALIQQINAIKPDLPILVLSMHQESQYAVQAMRAGASGYITKNTASSQLIEGI 115 Query: 126 LATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICERLS 185 P + +L + E +LT E ++ + VEG S+ +I + LS Sbjct: 116 RKVAEGGTFVSP-EISAKLIKQLHKPETDLPHTKLTAREFQIFSMLVEGHSVNDIAKILS 174 Query: 186 RTPSTISTHKNNAMRKLGLSTDADLIKYAYSTGMIN 221 + TISTHK ++K+ ST A L+ YA G+IN Sbjct: 175 LSNKTISTHKAAVLQKMEASTTASLVYYALKHGLIN 210 >gi|152981464|ref|YP_001354299.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] Length = 210 Score = 70.5 bits (171), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 105/219 (47%), Gaps = 12/219 (5%) Query: 6 VLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPAD 65 ++ + + DDH +V ++ +A++P+++I+ E + I ++ +IV+ D MP Sbjct: 1 MIKILVVDDHAVVRAGVQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMP-- 58 Query: 66 DSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINAC 125 + G ++K++K E P V++ + ++ R G + K +EL+NA Sbjct: 59 ---DKSGVEVLKQIKREKPELPVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAI 115 Query: 126 LAT-QSSKQLYFPVS--LRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICE 182 + K + V+ L EL+ S + L L++ E E+ +G + +I + Sbjct: 116 QTILRGHKYISHTVAELLTTELDTSTEK----PLHETLSKREYEIFYKLCQGHGVTKIAD 171 Query: 183 RLSRTPSTISTHKNNAMRKLGLSTDADLIKYAYSTGMIN 221 L + T+ST++ ++K+ + +A +I YA +I+ Sbjct: 172 ELCLSVKTVSTYRARVLQKMNMENNAGIIYYAIKQNLID 210 >gi|152983037|ref|YP_001352599.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 209 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 9/216 (4%) Query: 6 VLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPAD 65 +L + +ADDH ++ L+ + + I + E G + L+R+ ++++ D MP Sbjct: 1 MLRILMADDHALMREGLKHLFSVVGGIDVVAEASTGPQVFELLRRTDVDLILLDMTMPG- 59 Query: 66 DSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINAC 125 G L+ ++++ + ++V + + RR G I K LI+A Sbjct: 60 ----ISGATLIHHIRSQKTAPNILVLSMHDEVQFARRALDAGASGYITKDTDPQTLIDAI 115 Query: 126 LATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQS-ELEVVRLFVEGQSLGEICERL 184 + +S EM + G EL + E E+ +L V G+ + EI + L Sbjct: 116 HRVAEGGRF---ISRGLAEEMLFDHGTRARPSHELLSTREYEIFQLLVHGRGVNEIADEL 172 Query: 185 SRTPSTISTHKNNAMRKLGLSTDADLIKYAYSTGMI 220 S + T+STHK M K+ + LI+YA + GM+ Sbjct: 173 SISNKTVSTHKTRLMEKMKCENVSQLIRYAIAHGML 208 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 486,907 Number of extensions: 18308 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 7 Length of query: 221 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 141 Effective length of database: 925,261 Effective search space: 130461801 Effective search space used: 130461801 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)