BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1377.p
         (269 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980266|ref|YP_001352753.1| ferredoxin--NADP+ reductase [Ja...   152   2e-38

>gi|152980266|ref|YP_001352753.1| ferredoxin--NADP+ reductase
           [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  152 bits (384), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 20  RLLWVHRWTDKLLSFRTTRPAGYRFTAGQFARLGLEIEGEVVSRAYSITSAEGADYLEYY 79
           R+L VH W D L SF TTR   +RF +G F  +GL I+G+ V RAYSI S    ++LE+ 
Sbjct: 8   RVLSVHHWNDTLFSFTTTREPSFRFESGHFVMIGLPIDGKNVLRAYSIASPSWEEHLEFL 67

Query: 80  AIIVPEGKFTSRLNQLEPGDPIWVEKLSYGFLTADRFTDGKQLWMLATGTGLGPYVSILQ 139
           +I V +G  T  L  L+ GD + V +   G L        K+L++  +GTGL P++SI++
Sbjct: 68  SIKVQDGALTKHLQNLKVGDEMLVGRKPTGTLVISDLLPAKRLFLFGSGTGLAPFMSIIR 127

Query: 140 QPEVWRRFDDLVVVHGVRQREELAYADTFAQ--LRQQAGQQGLPARLHLLRCVTRETDLP 197
            P+ + RFD +V+VHGVR   ELAY D  A   L+ +   + + A+L     VTRE    
Sbjct: 128 DPDTYERFDQVVLVHGVRLVSELAYRDYVANELLQIEGLGEEIAAKLLYYPTVTRE---- 183

Query: 198 QAPGWLTGRITNLLKEGALERACGV-ALNLEQSRVMACGNPDMVTE 242
             P    GRIT  +  G +    G+  ++    R M CG+PDM+ +
Sbjct: 184 --PFVNEGRITTAISTGKMCEDLGIDPMSPLTDRAMICGSPDMLKD 227


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 628,247
Number of extensions: 24803
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 187
Effective length of database: 917,867
Effective search space: 171641129
Effective search space used: 171641129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)