BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1376.p (591 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981137|ref|YP_001354293.1| hypothetical protein mma_2603 [... 335 3e-93 gi|152981040|ref|YP_001353740.1| outer membrane protein [Janthin... 66 5e-12 >gi|152981137|ref|YP_001354293.1| hypothetical protein mma_2603 [Janthinobacterium sp. Marseille] Length = 604 Score = 335 bits (860), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 200/586 (34%), Positives = 301/586 (51%), Gaps = 16/586 (2%) Query: 6 SLAIAFLWCAADTAYAAYQVQIEAPAPVQSLLKDFLDISRYQDRDDISDEQLKFMMDTVG 65 SL IA A +Y V I SL + LD+ + + IS+E+++ ++ Sbjct: 35 SLLIALCLPFTSEAAPSYTVSISGADSYTSLFNEHLDVVKRSKTEGISEEEVQRLVAVAP 94 Query: 66 EQVRELSSTEGYFTPTTKVSAQTEPAANGQQAVRRITLTVDPGPRTEINATDISVTGVAA 125 EQVR L +TEGYF+P + E + L ++PG T+I A DIS +G Sbjct: 95 EQVRSLLATEGYFSPVVSSTLDQE------KTPWVAHLNIEPGTPTKIEAVDISFSGDIE 148 Query: 126 RQDQATVARIRQDWSLPVGQPFRQEDWDKAKNTGLEQLQQKKYAAARIAASEARIDPQEQ 185 ++ + ++R++W L G FRQ WD AK L+ + + Y AA IA SEARIDP Sbjct: 149 AKNPRRIEQLRENWGLKTGAVFRQSAWDSAKGDLLKAMLNRDYPAAAIAHSEARIDPATN 208 Query: 186 QAELAVRYDSGPAFTLGALQITGTRRYPDAIIRNVNPLIIGEPYDVNRLLALQRQIQNTP 245 A L V +SGPAFT G L+I G RY ++ +NP+ GE Y +L LQ ++Q+T Sbjct: 209 SATLTVHVNSGPAFTFGPLEIVGLNRYSREMVEKLNPIKPGERYSQEKLNELQARVQDTG 268 Query: 246 YFSNAIVAIDDDPEHPDQTPVKVQVTEFPTHRIRAGVGYSTDTGAQVEGRYSNYNMFNRA 305 YF +A I+ +P P+ P+K+ +TE R+ G+G+STD+G + + ++++ + + Sbjct: 269 YFRSAFATIEVNPAQPNNVPIKLDLTENERRRLSLGLGFSTDSGPRAQVKWTDRHFLGKD 328 Query: 306 YVFDSQVRLEQKRQYGTLSLAMPPDEKAFVNSLNTSYDRTQLEGVDLRSQQVGFKRARTG 365 + +SQ+R ++ + + P + + S+ Y+ T G + G + Sbjct: 329 WRLESQLRGDRDNRLLGADVYFPTLQNDWRPSVGAHYEYTDSSGETNDKFRTGARLTSPD 388 Query: 366 ENYDTTYSLTYYRDELSQENGSALPANTVVTPGKHRALVPGFAWSRRRVDNPIFPRQGNL 425 + +T S+ + D Q G+ N AL+ + ++RRRV+N I P +G Sbjct: 389 KRNETILSVGFLTDR--QRIGNVYGNN-------REALIASYIYTRRRVNNLISPTRGYY 439 Query: 426 LTLEAGFALKGLLTDQSFSRLYGRFKQFVPVGRRDIVVLRAELGGVFTKGSAGAVPPSLL 485 ++E G++ +S R GRF P R VLR ++G VF S VP LL Sbjct: 440 ASVEVDVGPAGVVNKKSLVRTVGRFTWLSPSYGRFQAVLRGQVGQVFGANS-DTVPADLL 498 Query: 486 FRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFTQSWGAAVFYDVGAAADN 545 FRTGG+ +VRGY Y S+G Q+G + AV S E T WGAAVF D G AA++ Sbjct: 499 FRTGGDQTVRGYDYNSLGVAQDGAIVGGTVTAVVSAEMIYSITPEWGAAVFTDAGNAANS 558 Query: 546 WSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKHQIRPHVSLGIAF 591 W+ G G GARWRSP+G +NLDLAYG +R H S+G F Sbjct: 559 WNGFRLEQGSGVGARWRSPIGPVNLDLAYGHASKDVRLHFSIGYGF 604 >gi|152981040|ref|YP_001353740.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 799 Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 120/523 (22%), Positives = 186/523 (35%), Gaps = 69/523 (13%) Query: 101 ITLTVDPGPRTEINATDISVTGVAARQDQATVARIRQDWSLPVGQPFRQEDWDKAKNTGL 160 IT+ + G + +DI + G ++ A + L G F E + Sbjct: 268 ITINIKEGEK--FTVSDIKLEGEMLGRE----AELTSLLQLKKGDVFSGEKLTASTKNIS 321 Query: 161 EQLQQKKYAAARIAASEARIDPQEQQAELAVRYDSGPAFTLGALQITGTRRYPDAIIRNV 220 ++L YA A + A+ +ID ++++ V D G + + I+G + D +IR Sbjct: 322 DRLGNFGYAFANVNAN-PQIDREKKEVAFTVMIDPGKRVYVRNINISGNTKTRDEVIRRE 380 Query: 221 NPLIIGEPYDVNRLLALQRQIQNTPYFSNAIVAIDDDPEHPDQTPVKVQVTEFPTHRIRA 280 YD ++ + +I YF++ V D DQ V + VTE PT I Sbjct: 381 MRQFENSWYDGEKIKLSRDRIDRLDYFNDVTVETPDVVGKTDQVDVNIGVTEKPTGNIML 440 Query: 281 GVGYSTDTGAQVEGRYSNYNMFNRAYVFDSQVRLEQKRQYGTLSLAMP--PDE------K 332 G G+S+ + G + N F V + + LS P D+ + Sbjct: 441 GAGFSSADKLSLSGGVNQANAFGSGNTVGVNVNTSRLNRTIALSSTNPYFTDDGISRSYE 500 Query: 333 AFVN-----SLNTSYDRTQLEGVDLR-------SQQVGFKRARTGENYDTTYSLTYYRDE 380 F+ ++NT R + G +++ V F T LT Y D Sbjct: 501 VFLRTTRPPTINTGDYRIRTMGANIKFGVPFTEYDTVFFGAGVEQTEVQTYTGLTNYNDS 560 Query: 381 -------LSQENGSALPA--NTVVTPGKHRALVPGF----AWSRRRVDNPIFPRQGNLLT 427 + NG P N+ G+H A AW R D+ + P +G Sbjct: 561 PDVYKRYVDSINGVTNPGDPNSAFQTGQHDASASAIPLTAAWQRDNRDSALVPTRGRYQR 620 Query: 428 LEAGFALKGLLTDQSFSRLYGRFKQFVPV-GRRDIVVLRAELGGVFTKGSAGAVPPSLL- 485 + G D ++ R + + F P+ + L E+ + K G V P Sbjct: 621 ANFEISPAG---DSNYYRATYQTQYFQPLFNGSTTLALNGEVN--YGKALGGKVYPIFKN 675 Query: 486 FRTGGNDSVRGYSYQSIGNEQ-NGTVYPTKYLAVGSTEYQ------------RWFTQSWG 532 F GG SVRGY S+G + NG + + E Q RWFT Sbjct: 676 FYGGGIGSVRGYESSSLGPKALNGDPLGGSARLIFNAELQMPFPGSGLDRSLRWFT---- 731 Query: 533 AAVFYDVGA--AADNWSNKTFYHGVGTGARWRSPVGTLNLDLA 573 F+D G A VG G W SP+G L L Sbjct: 732 ---FFDAGNVYADGFGGGGGLKTSVGIGLSWVSPIGPLKLSFG 771 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,405,438 Number of extensions: 59523 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 2 Length of query: 591 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 502 Effective length of database: 891,988 Effective search space: 447777976 Effective search space used: 447777976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)