BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1375.p (1340 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981265|ref|YP_001354294.1| hypothetical protein mma_2604 [... 350 3e-97 >gi|152981265|ref|YP_001354294.1| hypothetical protein mma_2604 [Janthinobacterium sp. Marseille] Length = 1257 Score = 350 bits (898), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 355/1325 (26%), Positives = 609/1325 (45%), Gaps = 130/1325 (9%) Query: 74 QLLGGTVADGLRLRALHYQDDKRILDIDRIDARWHL-ALLRRSLRLDYLRVGQVQLNQQP 132 Q + G ++ L++R L + + + + +D + L ALL +R+ L++G++ + + Sbjct: 5 QDVSGRLSGPLQIRQLKIKLENQSITLDDVLIETQLSALLAGQVRIPLLQIGKLSIISKI 64 Query: 133 SPS-EPSTLPASLEIPLALEIGEISLERLNLTQG-TSSTELSRLKLHGNSDGVQHTLVLD 190 S EPS LP S+ +P+ L++ +I + ++ G L ++ + DG ++ L LD Sbjct: 65 DQSKEPSKLPDSIGLPVKLKVDQIQVNGGSVAWGPVDVITLGAFAVNLDFDGKRYLLNLD 124 Query: 191 SLTTPYGDATALLH--------LNGKRPFAIGGGLELTGAYQHGQLKEQYQLAAQLSGSL 242 LT T L+ +P+ + L + + L GSL Sbjct: 125 QLTARSASGTNAYSGKFNGHATLSTTKPYPLQASLVSSTEAVLDERNIGANARIDLDGSL 184 Query: 243 QELGIALTAGGDRLKGSADILATPLASVPLKRAKIDLQHINPQAFNAAAPAADLHLRADL 302 E+ ++ A ++ ++ P + L A + Q +N P +++L+ Sbjct: 185 AEIVTSIDAQLNKALVKGKVILKPFSDSMLGAADLSAQALNLAELGDDLPKTNINLQLH- 243 Query: 303 APPAGLTADAPLQVSGRIDIDNAHPGRLDEQRLPLLSASADLKLDLQQQTLSRLDIRLLR 362 A +G SG + I NA G D R+PL DL L Q+ D + L Sbjct: 244 ATESG---------SGTLKISNAAAGLYDAGRIPL----TDLSLSFMQK-----DGKFLL 285 Query: 363 DARIE--GSGQFRPGSNEPGKQEPLSG--QFKLRVSDLDLSQLHRQVRPTRLSGPVDLSL 418 D + GS Q GS + GK + G L+ LDL +L +++R TRL +D+ Sbjct: 286 DPIVAKLGSTQQAAGSIQ-GKGQYADGALNITLKTDALDLKKLDQRMRATRLMIKLDVDH 344 Query: 419 APEAQQILLT----LQDSALKLHVDSMIGHDRVQVRQASLTAGKSRLETTGTLQTTGAMD 474 A Q I L L+ + L L+ +I + + V + L A S ++ + + +G Sbjct: 345 ADGKQVITLAATEALKKNKLSLNAHGVIADEALTVDRLELRADASAIDASAQVAFSGKQK 404 Query: 475 YELKGRLLDFDPSAVLQAVAPPAAPARKGRKSSAPVSKPIAARINMDFDAAGALSPELRL 534 + KG + F+P + P PA +N +F +G+ P L Sbjct: 405 FSAKGVIKQFNPRVLGDF---PQLPA---------------LNLNANFSVSGSRQPHLES 446 Query: 535 KLGFAIHDSSYGELPMSGRGDLNLVAMRLLPSRAHLQIAGNTLDLDGSFGAPSDKLKLKI 594 +L F IHDS P+SG G++ L A L + L N L G + +L + Sbjct: 447 ELNFRIHDSQLAGNPLSGEGEVRLHAETLDIPKLFLIAGKNKLSAQGKLAESNSRLTFNL 506 Query: 595 DAPQLAKLGYGLSGLLRVDGILAGTRQRPNLLASFQAEQLSF-GAHKLHHLAGQSELHSN 653 AP L +LG +G ++++G + G Q+P L+A ++ ++ G ++ G+++L N Sbjct: 507 QAPALEQLGPEFAGDVQINGEMRGKLQQPRLIADWKGNRIRVPGQTRIGSTEGKADLSLN 566 Query: 654 L---AAGVASPD-NRLALNVEGDGYS----GPQAELAH-----LAI-----KLDGTYAKH 695 L A +A+ N A+ ++ G QAE A L+I KL G Sbjct: 567 LKDNAFLLANATLNASAMTLQAGGQQVAKLTAQAEFAAQDNAPLSIVLRAEKLAGQLRAD 626 Query: 696 ALSLQAKGKLLDQSLD--LN-------LAAHGQLTEKTRGHYGWAGSLDQFSNQGLPRIA 746 L KG +L+ LN L A G L R W GS++ G Sbjct: 627 TFDLNVKGSTNQHTLNASLNEPEQKWKLVAAGGLKNLARAAR-WEGSINALDTSGRFNAK 685 Query: 747 MASPLALEASADGIEAGSTRIEIDRTALELKRLSYHQGRLASAGQVKALDVGRILELVQQ 806 + +P L S ++ ++ +L +++ + +++ G K L +G EL++ Sbjct: 686 LDAPAPLLISQKQVQLDQFKLTAPNASLNVEQFLRTERNISTRGNFKNLKIG---ELLRS 742 Query: 807 LTGTPPPVKT-DLVLDSDWDFTLAETASGYLQIARKSGDVRVTTSTGEATLGLSELQLRS 865 L P + + DL L +W+ +A+ G + I R+SGD+ + S A LGL+ + + Sbjct: 743 LN--PASIFSGDLALAGEWNLVMADKLDGKVGIRRESGDMAIHGSASTA-LGLTTFEASA 799 Query: 866 QFQGEQMRVSGRVNAARVGTLELD--GEIGLQRVDQVLALDAASPLNLSAKLDIPQVKRM 923 Q+R+ + R G ++++ IG D ++ +PL + K++ P + + Sbjct: 800 TATKGQVRLQLLADGKRTGRIDINLATTIG---GDGRFSIAPNAPLAGNIKMNTPTLAWL 856 Query: 924 GDLIGPQVNLDGKLAANLNAAGTLEQPKLSGAINGDNLAVTEFDQGIQLKDGIVRIVMDS 983 G LI P + ++G L A++ G+ +P+L+G +N D L + D GI LK G++R + Sbjct: 857 GPLISPSLVMEGNLQADVVLDGSFGKPRLTGPVNADGLRLLFTDTGIDLKQGVLRSSFQT 916 Query: 984 NVIDLRQIEFHGGSGTLRAGGKIQLGADNPDLNASLTADHLELFASPDRRLMLSGEGKIS 1043 + + + Q+ F G L G I L + L + +L DR+L++SG+ + Sbjct: 917 DQLVINQLSFKN-EGELMISGPISLLREQLALELKVKVTRYKLIDRSDRKLVISGDSVVG 975 Query: 1044 NVNEQLRVDGKFTVDRALFDLPKSSAPKLGDDVVIISR---SGKNRVGAAASSQQKLEAA 1100 + G+F V+ D+ S P+L DDVVI+ + SGK Sbjct: 976 WQEGVAKAKGQFEVNSGFVDIGVSGTPELSDDVVIVGKGHDSGK---------------- 1019 Query: 1101 TEKPASKFAPIINLAIDLGNDFRFRGSGADLLLRGDMNVRSEPLSPLRATGTINVAEGSY 1160 K A ++++I LG+ R +G G D LL G + + + LRA GT++VA G++ Sbjct: 1020 ------KTAISLDVSISLGDGIRLQGRGLDALLVGQVRLLASAGDALRAQGTLSVASGTF 1073 Query: 1161 EAFGTKLNIERGIINFTGPLSNPNLNILAMRRNQDVDAGVSVTGNVNQPRVQLVSEPNVP 1220 +A+ +L IE+G + F+GPL+NP L+I AMRR Q+V+AGVS+ G PR+ LVSEP V Sbjct: 1074 KAYQRELKIEQGSVLFSGPLNNPALDIRAMRRGQEVEAGVSIRGTALAPRITLVSEPTVT 1133 Query: 1221 DDEKLSWMMFGHGSDSSNIGQRTA-SSQALALV--GNMAG--KRITKDIGLDQFSIGSSD 1275 D EKLSW++ G G + R A S A +L+ G AG +I G D SIG Sbjct: 1134 DAEKLSWLVLGRGLSGTGDADRDALQSAATSLLSGGAAAGLQSQIASAFGFDDVSIGKGG 1193 Query: 1276 SGLTDDQVVNLGKAITQKITLGYEQSLQGAASIAKATWQISRRWSVVARAGTVNGLNILF 1335 + L D+++ LGK I+ K+ + ++QSL S+ + ++ R ++ AGT + L++ + Sbjct: 1194 TDL-QDRIITLGKRISDKLYVSFKQSLDDVGSVLLLRYTLTPRITLEGEAGTSSALSVFY 1252 Query: 1336 SQRYD 1340 + +D Sbjct: 1253 NFAFD 1257 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,854,573 Number of extensions: 121760 Number of successful extensions: 401 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 394 Number of HSP's successfully gapped: 1 Length of query: 1340 Length of database: 1,221,021 Length adjustment: 95 Effective length of query: 1245 Effective length of database: 869,806 Effective search space: 1082908470 Effective search space used: 1082908470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)