BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1374.p (519 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 152 4e-38 gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 143 2e-35 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 117 1e-27 gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [... 109 5e-25 gi|152982877|ref|YP_001352253.1| hypothetical protein mma_0563 [... 108 7e-25 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 152 bits (385), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/181 (46%), Positives = 114/181 (62%), Gaps = 10/181 (5%) Query: 326 ELERLYRTLEAQSQKDGLTDVFNRRYFDLALTAELARLNRSGESLSLIMVDVDHFKRYND 385 EL+RL T DGLT + NRRYFD L+AE R R + LS++++DVD+FK YND Sbjct: 169 ELQRLTNT-------DGLTGIANRRYFDDYLSAEWKRARREQQELSILLIDVDNFKLYND 221 Query: 386 TYGHAAGDVCLKKVATALGSVARRQGDIVARYGGEEFALILPNCNAASAAAIANRLVQAV 445 TYGH AGD+ LK+VA +L + A R D+ AR+GGEEFA+ILP + A ++ AV Sbjct: 222 TYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGSNGAVISGKKVCAAV 281 Query: 446 RTLDIPHEGSPMGH-VTISVGAASLASGKGAHVEARELIDIADAALYRAKEQGRDRAIQH 504 L IPH + +G +T+SVGAA++ A +LI++AD LYRAKE G+ R I Sbjct: 282 EALRIPHAHAAIGEWLTVSVGAATITP--QAEQVPNDLIELADKRLYRAKELGKHRVIWE 339 Query: 505 D 505 D Sbjct: 340 D 340 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 143 bits (361), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 116/207 (56%), Gaps = 14/207 (6%) Query: 305 RLVAQVARRETAELEAIAA---------RTE--LERLYRTLEAQSQKDGLTDVFNRRYFD 353 R V VAR+ ++++ +TE L L + LE S KDGLT V NRR FD Sbjct: 103 RDVVHVARKPDGSVDSLIGFMFDINERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFD 162 Query: 354 LALTAELARLNRSGESLSLIMVDVDHFKRYNDTYGHAAGDVCLKKVATALGSVARRQGDI 413 L E A S LS+I++D+D+FK+YND YGH GD CLK+VA L + A RQ D Sbjct: 163 SVLELEWANAMNSKRPLSIILLDIDYFKQYNDHYGHIQGDHCLKQVAKTLNNAAIRQRDF 222 Query: 414 VARYGGEEFALILPNCNAASAAAIANRLVQAVRTLDIPHEGSPMGH-VTISVGAASLASG 472 R+GGEEF LILP N SA +A R + IPHE S + +TIS+G ++ Sbjct: 223 FGRFGGEEFILILPETNEKSALTVAERCRMLIFKEQIPHEKSAVSQLLTISLGVHTVIPS 282 Query: 473 KGAHVEARELIDIADAALYRAKEQGRD 499 G EA + I+ AD LY AK++GR+ Sbjct: 283 YGD--EALKFIEEADRRLYLAKQKGRN 307 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 102/192 (53%), Gaps = 14/192 (7%) Query: 309 QVARRETAELEAIAARTELERLYRTLEAQSQKDGLTDVFNRRYFDLALTAELARLNRSGE 368 ++ TAEL AR E ERL R D LT FNRRYF+ E A++ R + Sbjct: 425 RIVSERTAELRK--ARDEAERLSRV-------DALTGAFNRRYFNEVAALEFAKVRRLHQ 475 Query: 369 SLSLIMVDVDHFKRYNDTYGHAAGDVCLKKVATALGSVARRQGDIVARYGGEEFALILPN 428 LS+I D+D FK+ ND YGHAAGD +K A + A R+ D VAR GGEEFA++LP Sbjct: 476 PLSVISFDIDLFKQINDNYGHAAGDEVIKAAAR-VSRNAVREIDFVARIGGEEFAILLPG 534 Query: 429 CNAASAAAIANRLVQAVRTLDIPHEGSPMGHVTISVGAASLASGKGAHVEARELIDIADA 488 AAA A RL + V + ++G + T S G A L K + L+ AD Sbjct: 535 STIEQAAATAERLRELVIAEQVSYQGKLLAF-TASFGVAQL---KDSDQSFEALLQRADE 590 Query: 489 ALYRAKEQGRDR 500 +YRAK GR+R Sbjct: 591 MMYRAKNLGRNR 602 >gi|152982756|ref|YP_001352256.1| hypothetical protein mma_0566 [Janthinobacterium sp. Marseille] Length = 421 Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 93/172 (54%), Gaps = 10/172 (5%) Query: 332 RTLEAQ---SQKDGLTDVFNRRYFDLALTAELARLNRSGESLSLIMVDVDHFKRYNDTYG 388 RT+E + D L+ + NRR A LA R G L++ +D+D FK +ND +G Sbjct: 254 RTVEENRHLATHDELSKLLNRRAIVSAGEYNLASATRLGHELTIAFIDIDMFKHFNDKFG 313 Query: 389 HAAGDVCLKKVATALGSVARRQGDIVARYGGEEFALILPNCNAASAAAIANRLVQAVRTL 448 HAAGD +++VA L R D+V RYGGEEF +ILP N +AA + RLV AVR Sbjct: 314 HAAGDTVIQEVAAILQQTCRTI-DMVGRYGGEEFLIILPGVNRDAAAIVGERLVDAVRQ- 371 Query: 449 DIPHEGSPMGHVTISVGAASLASGKGAHVEARELIDIADAALYRAKEQGRDR 500 + + VTIS G +L K +L+ ADAALY AK GR+R Sbjct: 372 ---YRFMGIHPVTISAGLTTLP--KTEQCTWTQLVRRADAALYEAKGLGRNR 418 >gi|152982877|ref|YP_001352253.1| hypothetical protein mma_0563 [Janthinobacterium sp. Marseille] Length = 321 Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/196 (38%), Positives = 106/196 (54%), Gaps = 9/196 (4%) Query: 306 LVAQVARRETAELEAIAARTELERLYRTLEAQSQKDGLTDVFNRRYFDLALTAELARLNR 365 L+ Q++ R A + R ++ YR L S DGLT++ NR + + L+ + + Sbjct: 131 LLRQLSFRLRAANAQLRRREKVGEFYRQL---SMVDGLTNLHNRAWLNDKLSVLVEEAHA 187 Query: 366 SGESLSLIMVDVDHFKRYNDTYGHAAGDVCLKKVATALGSVARRQGDIVARYGGEEFALI 425 LSLIM+D+DHFKR+ND YGH GD L+ A L S A R D RYGGEE +I Sbjct: 188 GKRPLSLIMIDLDHFKRFNDEYGHLLGDTALRTAAGVL-SAALRPSDFAVRYGGEELIVI 246 Query: 426 LPNCNAASAAAIANRLVQAVR-TLDIPHEGSPMGHVTISVGAASLASGKGAHVEARELID 484 LP+ N A+ +A RL + +R + P+ H+T S G A LA + A Sbjct: 247 LPDSNGAAGTMVAQRLCERMRLAVVFADMHMPLPHITASFGVAMLAPQQDADGLLAA--- 303 Query: 485 IADAALYRAKEQGRDR 500 ADAALYRAK+ GR++ Sbjct: 304 -ADAALYRAKQAGRNQ 318 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,121,404 Number of extensions: 43625 Number of successful extensions: 214 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 160 Number of HSP's successfully gapped: 30 Length of query: 519 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 432 Effective length of database: 899,382 Effective search space: 388533024 Effective search space used: 388533024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)