BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1371.p (276 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981314|ref|YP_001351949.1| ABC-type transport systems, per... 110 1e-25 gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport... 103 8e-24 gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide... 99 3e-22 gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transp... 76 3e-15 >gi|152981314|ref|YP_001351949.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 303 Score = 110 bits (275), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 126/258 (48%) Query: 15 RRVTPGQWAGLLLLLMIVLFAWLGPLLIEVDPAGQQLSRFLETPSLAHPLGYDQLGRSML 74 R++ PG L +L +++ LL DP PS AH LG D+ GR + Sbjct: 36 RKLRPGLVLAALFVLFLIVATLQPSLLTSNDPLAASAREAFRAPSAAHWLGTDENGRDVW 95 Query: 75 ARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAWCGGWVERVLAALADAVLALPGLLLVL 134 RL +G + SL + L + GI +GL A ++ L L D +LA P LLL L Sbjct: 96 TRLIYGVQPSLLMGLAATAIGLSIGIAVGLFAGLGHRIIDNFLMRLIDVLLAFPDLLLAL 155 Query: 135 LLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASAPVEASRLLGFGPGYIVRRHL 194 ++ F G + + +A Y R+VRA + I+ + VEA+ LG ++ RH+ Sbjct: 156 VIITFWGQGLVNAVIAVGVASVPRYARMVRAQTHIVRNAQYVEAAVTLGLRRSTVIIRHV 215 Query: 195 MPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVGS 254 +P + + L G+ G + A +AL F+G G PP+PE G M+ + A WLV + Sbjct: 216 LPNAIKPILILATIGIGGKIAAGAALSFLGFGAPPPSPEWGSMLSVGRNFLSNAWWLVAA 275 Query: 255 PVLVLFLTLLALLLLSPQ 272 P + + LT++++ L + Sbjct: 276 PGVAVTLTVVSITALGRE 293 >gi|152981284|ref|YP_001353093.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 298 Score = 103 bits (258), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 131/252 (51%), Gaps = 1/252 (0%) Query: 26 LLLLMIVLFAWLGPLLIEVDP-AGQQLSRFLETPSLAHPLGYDQLGRSMLARLAHGTRLS 84 L++ +IV A P L +DP G + R L S + LG D+LGR ML+RL +G RLS Sbjct: 42 LVVFLIVCAAVFAPWLAPMDPYKGSMIKRLLPIGSEGYLLGTDELGRDMLSRLMYGGRLS 101 Query: 85 LSLALVSVLSAAIPGIVIGLLAAWCGGWVERVLAALADAVLALPGLLLVLLLAAFAPGGF 144 L + + VL+A G IGLLA + GG + ++ + D A P +LL + ++ G Sbjct: 102 LLMGVTPVLAAFGIGTSIGLLAGYVGGRLNMIIMRVLDVFYAFPSVLLAVAISGALGPGM 161 Query: 145 WPLYVGISLALWVEYFRVVRAASRILLASAPVEASRLLGFGPGYIVRRHLMPALLPRLFT 204 + ++L + RV + + + +EA+R+ G I+R H++ +L +F Sbjct: 162 TNSILALTLVFVPQVVRVAESVTTQVRKLDYIEAARMSGASAFSIIRVHVLGNVLGPVFV 221 Query: 205 LMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVGSPVLVLFLTLL 264 L+ +++ + L F+G+G++PP PE G+M+ L PW+ P L++F+T + Sbjct: 222 YATGLLSVSMILAAGLSFLGLGVKPPEPEWGLMLNTLRSAIFRNPWVAALPGLLIFITSI 281 Query: 265 ALLLLSPQKENA 276 LL+ +A Sbjct: 282 GFNLLADGVRSA 293 >gi|152981210|ref|YP_001355210.1| ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Janthinobacterium sp. Marseille] Length = 301 Score = 99.0 bits (245), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 84/288 (29%), Positives = 141/288 (48%), Gaps = 27/288 (9%) Query: 10 VETRPRRVTPGQWA------GLLLLLMIVLFAWLGPL--------LIEVD-------PAG 48 +ET RR + +A G ++LL+IVL A P+ L ++D P Sbjct: 10 IETPFRRFSRNFFASKVATLGFIILLLIVLAAVFAPVIAPQNPYDLAQIDIMDSRLEPGK 69 Query: 49 QQLSRFLETPSLAHPLGYDQLGRSMLARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAW 108 Q + SL + LG D+ GR ML+ + +G R+S+ + +VS A + G+ +GL A + Sbjct: 70 QNIDH-----SLTYVLGTDEQGRDMLSAILYGVRISIIVGVVSTAIALLIGLTLGLFAGY 124 Query: 109 CGGWVERVLAALADAVLALPGLLLVLLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASR 168 GG +E ++ +AD L+ P +L+ L+L A G + + + W Y R R+A+ Sbjct: 125 FGGRIESLIMRIADIQLSFPPILVALILLALMGPGIGKIIIALVAVQWAYYARTARSAAL 184 Query: 169 ILLASAPVEASRLLGFGPGYIVRRHLMPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQ 228 + +EA+ LG P V HL+P LP L + +A A+ + L F+G+GL Sbjct: 185 VERKKEYIEAATGLGLSPLRTVFHHLLPNCLPPLIVIAALQVASAISLEATLSFLGIGLP 244 Query: 229 PPTPELGVMMIELLPYYREAP-WLVGSPVLVLFLTLLALLLLSPQKEN 275 P LG+++ Y W+ P + L LT++A+ L++ Q + Sbjct: 245 VTEPSLGLLIANGFDYMMSGKYWISLFPGIALLLTVVAINLVADQLRD 292 >gi|152981281|ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 75.9 bits (185), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 2/184 (1%) Query: 58 PSLAHPLGYDQLGRSMLARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAWCGGWVERVL 117 PS + LG D GR ++ARL +G R+S+ L + + G++ G + + G + Sbjct: 123 PSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLITGAIQGYFAGKTDLFF 182 Query: 118 AALADAVLALPGLLLVLLLAA-FAPGGFWPLYVGISLALWVEYFRVVRAASRILLASAPV 176 + A+P L L+++ A+ F P L + W+ VRA V Sbjct: 183 QRFMEIWGAMPELYLLIIFASIFQPSIGLLLILLSLFG-WMSLSDYVRADFLRNRNLEYV 241 Query: 177 EASRLLGFGPGYIVRRHLMPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGV 236 +A+R LG G I+ RH++P L + T + F ++GA+LA+++L F+G+G+ P T LG Sbjct: 242 QAARALGLSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASLGE 301 Query: 237 MMIE 240 ++ + Sbjct: 302 LLAQ 305 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.144 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 563,729 Number of extensions: 20497 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 4 Length of query: 276 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 194 Effective length of database: 917,867 Effective search space: 178066198 Effective search space used: 178066198 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)