BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1370.p (322 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport... 168 5e-43 gi|152982533|ref|YP_001351955.1| ABC-type transport systems, per... 139 2e-34 gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transp... 125 4e-30 gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transp... 68 6e-13 >gi|152981104|ref|YP_001353092.1| ABC-type oligopeptide transport systems, permease component [Janthinobacterium sp. Marseille] Length = 316 Score = 168 bits (425), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 121/315 (38%), Positives = 173/315 (54%), Gaps = 22/315 (6%) Query: 19 QRLLQASLVALLVGTLCFFMTRLLPGDMAYRIAAGRYGYDMVTTEAALAVRAELGLDQPW 78 +RLL A +AL V L F + L PGD IA D++ A+++ GLD+P Sbjct: 7 KRLLYAIPIALSVTLLSFMLVYLAPGDPLNAIAPADAPADVIA-----ALKSAYGLDKPV 61 Query: 79 FMALGQWWSRLLHLDLGTSQVTALPVLVEIAHQLGPTLRLSLLALALSLLFGPTLGILAG 138 + G W SR + DLGTS + V+ E+ + TL L+ +A + +LFG LG LAG Sbjct: 62 PVQYGMWLSRAVQGDLGTSIASGRQVVTEVMSAVSNTLLLAGVAGFIGVLFGCVLGALAG 121 Query: 139 LNPGGWLDRSTLALSVLLRALPSFLLGLILVLLFSVQLGALPAAG--------------H 184 GGW+DR LSV+ ++P + LGL+L ++FS+ LG PA G H Sbjct: 122 YWHGGWIDRIATFLSVIGVSVPHYWLGLVLTIIFSIWLGWFPAMGAGPGGSSEWLWDYDH 181 Query: 185 VDHGGILLPALTLALGLAAVSCRVARDAMVQVRASEYFAFALTKGLSPAQALARHGVRNV 244 + H ++LPA+TLA+ + R R + + E+ +GLS +A+ RH +N Sbjct: 182 IRH--LVLPAITLAVIPMGIITRTVRALVADMLEQEFVIALRARGLS-NRAIFRHIAKNT 238 Query: 245 AAPVVAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQGTALVLGLMFVL 304 A V+A G+Q+ L+ G +LVET+FAWPG G L AIF RD+P++QGT LVL + FV Sbjct: 239 APTVLAVAGLQIGYLMGGSILVETVFAWPGTGFLLNTAIFQRDMPLLQGTILVLCMFFVG 298 Query: 305 FNALVDTTCAFLDPR 319 N +VD LDPR Sbjct: 299 LNLIVDILQPLLDPR 313 >gi|152982533|ref|YP_001351955.1| ABC-type transport systems, permease component [Janthinobacterium sp. Marseille] Length = 310 Score = 139 bits (350), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/289 (32%), Positives = 145/289 (50%), Gaps = 3/289 (1%) Query: 33 TLCFFMTRLLPGDMAYRIAAGRYGYDMVTTEAALAVRAELGLDQPWFMALGQWWSRLLHL 92 TL F + GD A I G M T E VR E GLD P G + +RL Sbjct: 23 TLTFIAINITAGDTALAIVGGPDA--MPTAEVLAQVRKEYGLDDPLLTQYGNYIARLAKG 80 Query: 93 DLGTSQVTALPVLVEIAHQLGPTLRLSLLALALSLLFGPTLGILAGLNPGGWLDRSTLAL 152 DLG S +PVL + QLG T++L+L A LS++ + +L W+ Sbjct: 81 DLGESYRLRIPVLKAVTQQLGATVQLALSAGVLSIVLSVVIALLTA-RRAPWIRSIVSGA 139 Query: 153 SVLLRALPSFLLGLILVLLFSVQLGALPAAGHVDHGGILLPALTLALGLAAVSCRVARDA 212 + + + PSF++G++L+L+FS PA+G ++LP + LAL +A V +V R A Sbjct: 140 ELTITSAPSFVIGILLLLVFSFYFHWFPASGSQGWRALVLPTIALALPVAGVLTQVLRQA 199 Query: 213 MVQVRASEYFAFALTKGLSPAQALARHGVRNVAAPVVAYLGVQLVMLVEGVVLVETIFAW 272 + V + A +G+S A RH +R+ P+V G L+ G V+VE +FA Sbjct: 200 LEDVLEQPFILTARARGMSDAGVRLRHALRHALVPLVTLSGFVFASLLGGAVVVEMLFAR 259 Query: 273 PGIGHALVHAIFGRDVPMIQGTALVLGLMFVLFNALVDTTCAFLDPRGR 321 G+G ++ A +DVP++ G L+ ++V+ N +VD + +DPR R Sbjct: 260 QGVGRLMLDAANTKDVPIVLGITLLAAFIYVIVNIVVDVLYSLIDPRVR 308 >gi|152980968|ref|YP_001355211.1| transmembrane (dipeptide transport system permease) ABC transporter protein [Janthinobacterium sp. Marseille] Length = 325 Score = 125 bits (313), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/268 (30%), Positives = 145/268 (54%), Gaps = 16/268 (5%) Query: 70 AELGLDQPWFMALGQWWSRLLHLDLGTSQVTALPVLVEIAHQLGPTLRLSLLALALSLLF 129 A GLD+P + + + DLG S L I +L T+ L++ A+ +S++ Sbjct: 52 AAFGLDKPLWQQYFIFIQNAVSGDLGRSFAFGTSALGLILERLPATMELAISAILISIVL 111 Query: 130 GPTLGILAGLNPGGWLDRSTLALSVLLRALPSFLLGLILVLLFSVQLGALPAAGHVDHGG 189 G LG+ AGL P W+ +S +A+S+L +LP+F +GL+L+++F+VQLG LPA+G + Sbjct: 112 GIPLGLWAGLRPHSWIGKSIMAVSILGFSLPTFWVGLMLIMVFAVQLGWLPASGRGETTL 171 Query: 190 IL-LPALTLAL-GLA--------------AVSCRVARDAMVQVRASEYFAFALTKGLSPA 233 +L +P L+ GL A+ R+ R + +Y FA KGL + Sbjct: 172 LLGIPVSFLSWDGLKHLLLPSLNLALFNIALVIRLTRAGAQEALLQDYVKFARAKGLRNS 231 Query: 234 QALARHGVRNVAAPVVAYLGVQLVMLVEGVVLVETIFAWPGIGHALVHAIFGRDVPMIQG 293 + + H ++N+ P+V + +Q ++ ++ E++FAWPG+G ++ +I D P+I Sbjct: 232 RIIGVHVLKNILIPIVTVIALQFGSIIAFAIVTESVFAWPGMGKLIIDSIRVLDRPVIVA 291 Query: 294 TALVLGLMFVLFNALVDTTCAFLDPRGR 321 +++ +F+L N +VD + LDPR R Sbjct: 292 YLMLIVALFILINLIVDVAYSLLDPRVR 319 >gi|152981225|ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 354 Score = 68.2 bits (165), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/289 (24%), Positives = 119/289 (41%), Gaps = 29/289 (10%) Query: 53 GRYGYDMVTTEAALAVRAELGLDQPWFMALGQWWSRLLHLDLGTSQVTALPVLVEIAHQL 112 GR G D E ++A G D+P Q DLG S V + +L Sbjct: 65 GRQGID---AERVAEIKALYGFDKPPVERFWQMLKGFATFDLGQSFYHHKDVWDLVVSKL 121 Query: 113 GPTLRLSLLALALSLLFGPTLGILAGLNPGGWLDRSTLALSVLLRALPSFLLGLILVLLF 172 ++ L + L+ LGI + G D + + ++ ++P F+LG+ L+++F Sbjct: 122 PVSITLGMWTFFLTYFISLPLGIAKAVREGSRFDSLSTIVVLIGYSIPGFILGVFLLVMF 181 Query: 173 ---------------SVQLGALPAAGHV-DH-GGILLPALTLALGLAAVSCRVARDAMVQ 215 S L G V D+ I LP G A+ + ++ ++ Sbjct: 182 GGGSFVQWFSLRGLTSDNWEQLSLLGKVLDYLWHIALPVTASVAGSFAMMTMLTKNTFLE 241 Query: 216 VRASEYFAFALTKGLSPAQALARHGVRNVAAPVV-----AYLGVQLVMLVEGVVLVETIF 270 +Y A KGLS + L +H RN P+V A++G G +L+ET+F Sbjct: 242 EIRKQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPAAFIGA----FFTGSLLIETLF 297 Query: 271 AWPGIGHALVHAIFGRDVPMIQGTALVLGLMFVLFNALVDTTCAFLDPR 319 + G+G ++ RD P++ GT + L+ ++ L D + DPR Sbjct: 298 SLDGLGLLSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCYVWADPR 346 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 551,578 Number of extensions: 17015 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 4 Length of query: 322 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 239 Effective length of database: 914,170 Effective search space: 218486630 Effective search space used: 218486630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)