BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1369.p
         (515 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982754|ref|YP_001351954.1| ABC-type transport system, peri...    97   2e-21
gi|152982591|ref|YP_001355212.1| ABC-type transport system, peri...    82   7e-17

>gi|152982754|ref|YP_001351954.1| ABC-type transport system,
           periplasmic component [Janthinobacterium sp. Marseille]
          Length = 585

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 159/354 (44%), Gaps = 43/354 (12%)

Query: 63  LLEVDDAGQLRPALARTWEVSADGLQWRFALQAGRRYHDGSVVTPASVLACLQR------ 116
           L+  D+ G + P LA++WE+S DG  + F L+    + DG      +V   L+       
Sbjct: 110 LVYQDEQGNISPWLAKSWEISPDGKTYTFHLRDDVTFSDGVRFNAEAVQVNLEHMRDPAT 169

Query: 117 ------AAVRPGVLQLASITAMSVQESVLVVSLSKPFGPLPYLLTHYSTQILAPSSFDAH 170
                 A +RP       +    V E     +LS+P+ P   +L      +++P     +
Sbjct: 170 KSPLAAAYIRP------YLRGRIVDEYTFEATLSEPYSPFLDVLAQSWLSMISPKQIREN 223

Query: 171 GNVVAI--VGSGPF------RIQSISLPQQFDVERVAP-----GPDKAIQRARYISVSRA 217
              +A   +GSGPF      R Q  +  ++ D     P     GP   + R     V  A
Sbjct: 224 PKSIAEHPIGSGPFVLESYVRAQGANFVKRADYNWAPPVVRHKGP-AYLDRIELTFVPEA 282

Query: 218 ETRTLLVQSGQAELAFSLDPP--SIRALQESPRARLLSAMLPRTTI--LKLNAGHPFLAD 273
             R   +QS Q++  F+LD P  + +A++  P  R  S +        L LN       D
Sbjct: 283 MIRYSSLQSAQSD--FTLDAPAQNAQAIRADPALRFHSRVRKGNPFRSLTLNVEKAPFND 340

Query: 274 VRVRRAISLCMEREGIARALLRDPDLGATQLFPPSLTRWHDPQLA-PLHTDLKQARRLLE 332
           V++R+A++L ++REG+A  +    +      F  + +R++DP     L  ++ +A RL +
Sbjct: 341 VQIRKALALAIDREGVA-WITGFGEYEPKSDFLAANSRYYDPSFKNALTYNVAEANRLFD 399

Query: 333 EAGWRLGAD-GVRWRDGRKLELSLTTFVDRPELP-LIATALQEEMRQIGIAVRV 384
           +AGW    D G R +DG++L  ++    + P  P  +A A+Q + R++G  + +
Sbjct: 400 QAGWTTRDDKGYRTKDGKRLSATV-LITENPAFPNSVAVAIQADARKVGFELNI 452


>gi|152982591|ref|YP_001355212.1| ABC-type transport system,
           periplasmic component [Janthinobacterium sp. Marseille]
          Length = 522

 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 202/491 (41%), Gaps = 65/491 (13%)

Query: 58  EVLQTLLEVDDAGQLRPALARTWEVSADGLQWRFALQAGRRYHDGSVVTPASVLACLQRA 117
            +   L+ VD  G+L P LA +W  + D   W F L+   ++HDGS  T   V+  L R 
Sbjct: 55  HIFDALVNVDANGKLVPGLATSWR-AVDATTWEFKLRHDVKFHDGSKFTAEDVVFSLDRP 113

Query: 118 AV-----RPGVLQLASITAMSVQESVLV-VSLSKPFGPLP------YLLTHYSTQILAPS 165
           A       P       I A  + +   V +S + P+GPL       ++++  + +  +  
Sbjct: 114 AKLTNSPGPYTAYTKQIIAKKIVDPYTVRLSTATPYGPLALDVSAIFIVSKKAAEKASTE 173

Query: 166 SFDAHGNVVAIVGSGPFRIQSISLPQQFDVERVAP--GPDKAIQRARYISVSRAETRTLL 223
            F++     A++G+GP++  S     + +V R     G      +  +  ++ +  R   
Sbjct: 174 DFNSGK---ALIGTGPYKFVSFKRGDRIEVARNEQYWGGKSDWDKVSFRIITNSAPRLAA 230

Query: 224 VQSGQAELAFSLDPPSIRALQESPRARLLSAMLPRTTILKLN------------AGHPF- 270
           + SG  +    +    +  L+ + + +L   +  RT   +++            AG P  
Sbjct: 231 LLSGDVDAIEGVPTADLSKLKGNAKFKLEQKISWRTIFWEIDQSERSSRYVTDKAGKPLP 290

Query: 271 ---LADVRVRRAISLCMEREGIARALLRDPDLGATQLFPPSLTRWHDPQLAPLHTDLKQA 327
              L D+RVR+AIS  + R+ +    +    + A+ +  P L  ++D  L     D + A
Sbjct: 291 KNPLRDIRVRQAISKAINRQALVDRTMEGLAVPASNIVAPGLLGYND-ALKVEAYDPEGA 349

Query: 328 RRLLEEAGWRLGADGVRWRDGRKLELSLTTFVDR--PELPLIATALQEEMRQIGIAVRVV 385
           ++LL EAG+  G             L+L    DR   +  ++ T  Q  + +IGI  +V 
Sbjct: 350 KKLLAEAGYPNG-----------FVLTLHGPNDRYINDAQVVQTVAQ-FLNRIGIQTKVE 397

Query: 386 IGNSSDIPAGHRSGALQMALAARNYGNLPEPVA--SLLQDFGPQGGDWGAMGWDNTEVPA 443
               S   +  R+G   +AL    +G L       +L+    P  G WG   W     PA
Sbjct: 398 TLPLSVYFSKARAGEFSVALLG--WGTLAGDFGLRTLVGTSNPDIG-WGTWNWGKYSNPA 454

Query: 444 LLARLAQLPAMPAGGAD----SGRAERARIVALLQEQLPVIPVVWYRQTCAVSRRLQ-GA 498
               L +L A   G  D     G A+ A  VA+  +   V+P+     T A+ + L+  A
Sbjct: 455 ----LDKLIAASLGSVDQAKREGYAKEAAAVAM--KDYAVVPLHHQYATWAMRKGLKYTA 508

Query: 499 SLDPFERSYRL 509
             D F  +++ 
Sbjct: 509 RTDEFTFAHQF 519


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,174,336
Number of extensions: 47910
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 515
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 428
Effective length of database: 899,382
Effective search space: 384935496
Effective search space used: 384935496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)