BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1366.p
         (302 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982204|ref|YP_001353605.1| transporter of the DMT superfam...   253   1e-68
gi|152982786|ref|YP_001353627.1| transporter of the DMT superfam...    74   2e-14

>gi|152982204|ref|YP_001353605.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 309

 Score =  253 bits (645), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 135/297 (45%), Positives = 198/297 (66%), Gaps = 5/297 (1%)

Query: 2   RSDLSYKSLCFPLGAVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARSTWA 61
           R+ + Y  L +P  A+++WAGN ++SK++A  I+P  I+FYR VL  LLMSP +    W 
Sbjct: 6   RARILYPYL-YPFLAIVLWAGNVIVSKLAASAISPTAITFYRLVLVLLLMSPVMLGPLWR 64

Query: 62  ARAQIRPHLGKILVLALLGMVLYQSLAYFAAATASATSMGIISSLMPLMTLVLSIKLLAE 121
            RA IR H  K+ +  LL M L+QSL+Y AA + +AT+M I+++L+PL+T +LS+ +L E
Sbjct: 65  NRAMIRRHFWKLALSGLLAMALFQSLSYRAAESTTATNMAIVTALIPLLTAILSVMVLGE 124

Query: 122 PPTVGTLAGGILSLFGLAVLIGRGHPLALFEQGVVAGDLLMLAATVAYGLYGVMLRRWAL 181
             T+G LAGGILS  G+  L+G+G   A    GV  GDLLML A  +Y LYGV+L+ W +
Sbjct: 125 AITLGMLAGGILSFGGILYLLGQGDMAAALANGVHIGDLLMLLAAASYALYGVLLKYWKM 184

Query: 182 PLRTWQLLYLQVLMATVLLFPGFLL---GHHSPITRANLPILLYAGIGASIISQFLWMRG 238
           P+  WQ +Y+Q   A + + P F++   G  S   R  LP++ YAGIG+SII  FLW+ G
Sbjct: 185 PVPAWQAIYIQAFAALIFMLPMFVMLPPGAASLDAR-TLPLIAYAGIGSSIILSFLWIEG 243

Query: 239 VVHLGASRCAIFVNLMPIFTVIIAVLALGESLHGYHALGGSITLVGVMLAQVFKQRL 295
           V  LG +RC+IF+NL+P+ T + AV+ L +++H YH +GG +TL+GV+L Q  ++ L
Sbjct: 244 VKQLGPNRCSIFINLLPVLTALFAVIWLHDAMHAYHVIGGGVTLLGVLLTQTVQKPL 300


>gi|152982786|ref|YP_001353627.1| transporter of the DMT superfamily
           [Janthinobacterium sp. Marseille]
          Length = 299

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 131/283 (46%), Gaps = 10/283 (3%)

Query: 16  AVLIWAGNTVISKMSAGVIAPEDISFYRWVLAALLMSPFLARSTWAARAQIRPHLGKILV 75
           A ++WAGN ++ +    ++ P  ++  RW +A L++ P LA   +   +    +  +  +
Sbjct: 16  APIMWAGNAIVGRSVNAMVPPVTLNLLRWAIAMLILLP-LASWIFRRDSPFWRNWRRFSL 74

Query: 76  LALLGMVLYQSLAYFAAATASATSMGIISSLMPLMTLVLSIKLLAEPPTVGTLAGGILSL 135
           L LLG+ LY +L Y A  T+S  ++ ++++ MP+  L++         +     G +LS+
Sbjct: 75  LGLLGVGLYNTLQYLALQTSSPINVTLVAASMPVWMLLIGSLFFGVKVSHKQALGAVLSI 134

Query: 136 FGLAVLIGRGHPLALFEQGVVAGDLLMLAATVAYGLYGVMLRRWALPLR---TWQLLYLQ 192
            G+ +++ RG    L    +VAGD+ M+ A + +  Y  +L     P      W    L 
Sbjct: 135 VGVLIVLSRGELRQLLALRLVAGDVFMIIAAIVWSFYSWLLTLPKDPEEIRSDWAAFLLA 194

Query: 193 VLMATVLLFPGFLLGH------HSPITRANLPILLYAGIGASIISQFLWMRGVVHLGASR 246
            +   V     F  G       H       +  L++  IG +II+   W  GV  +G + 
Sbjct: 195 QVAFGVAWSCLFTAGEWALGDLHIDWGWPLVAALIFVAIGPAIIALRCWGIGVQRVGPTI 254

Query: 247 CAIFVNLMPIFTVIIAVLALGESLHGYHALGGSITLVGVMLAQ 289
              F NL P+F  +++   LGE  H YH +   + + G++++ 
Sbjct: 255 AGFFANLTPLFAALMSSAFLGEMPHLYHGIAFILIVGGIVISS 297


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 704,908
Number of extensions: 28803
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 4
Length of query: 302
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 219
Effective length of database: 914,170
Effective search space: 200203230
Effective search space used: 200203230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)