BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1363.p (513 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-li... 322 2e-89 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 289 3e-79 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 260 1e-70 gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 198 6e-52 gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-li... 176 2e-45 >gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 480 Score = 322 bits (826), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 219/464 (47%), Positives = 285/464 (61%), Gaps = 22/464 (4%) Query: 47 FKEGQNWKPAQPRDLA-ADGKWWEMFGDPQLNALIAQVDISNQNLALAEANFRSAVALVQ 105 +KE W+ A WW +F DP LN L ++ + N+NL A +A A V Sbjct: 33 YKEAGLWQEGTANSAANVPDDWWTLFQDPVLNDLEGRLVVGNENLKSLVAQVAAARAAVA 92 Query: 106 SSRSAYSPTLSASAGASRASSGSAGSSSGNGGSTNGASS-GGVRNSYTFSLTAAWEPDLW 164 +S SA PTLS G AGS N ST +++ N+ + S A+WE DLW Sbjct: 93 ASYSARLPTLSV---------GLAGSRDSNPSSTTRSTTVQNPSNNVSLSGNASWEVDLW 143 Query: 165 GKVRRDVESSQTSAQASAADLAAARLSAQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSL 224 G++ + +Q + QAS DLAAARLSAQA +AQ Y LR DAQ +LE +V AYQRSL Sbjct: 144 GRLAQATTGAQANLQASVDDLAAARLSAQATLAQTYFSLRTTDAQLSVLERSVAAYQRSL 203 Query: 225 QVTQNQYAAGMVAKSDVIQAQTQLKSAQASALDNGVTRAQVEHAIALLVGKTPAEFSLPR 284 +TQ +Y G+VA+ DV+QAQTQLK+AQA + RA +EHAIA+L+G P+ +L R Sbjct: 204 DLTQFRYGGGVVARVDVLQAQTQLKAAQAQLAEAIAQRAILEHAIAVLLGVPPSALALER 263 Query: 285 RPLTAVAPPVPQGIPSMLLERRPDVAAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQS 344 AP VPQ +P+ LLERRPD+AAA+RRVAAA A+IGVA AAYFPSL LSA GGYQ+ Sbjct: 264 NASLPQAPLVPQMLPTTLLERRPDIAAAQRRVAAAYAQIGVAHAAYFPSLVLSAGGGYQN 323 Query: 345 SSFSDWFTLPGRVWSLGPQLAQTIFDGGARAAATDQAIANYDGTVATYKQTVLTAFQDVE 404 SS S+ + P WSLG +AQ IFDGG R A+ QA + D + Y+QTVLTA Q+VE Sbjct: 324 SSLSNLISAPNLFWSLGASVAQAIFDGGQRQLASAQAQSVADQATSAYRQTVLTALQEVE 383 Query: 405 DNLAALRILEQEAAVQHEALLAARQAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLN 464 DNL L+QEA +Q E+L AA++ + + +QY+AGTVSY+NV AQ TAL +E L+ Sbjct: 384 DNLILAAQLQQEAQLQQESLEAAQRTLEITLDQYRAGTVSYLNVAIAQTTALVSENNLLS 443 Query: 465 ILNRRMAASVLLAKALGGGWDEHSLDDLGPLEQQTADKAKALKE 508 NRR+AA+ +L K + G W E D KA+KE Sbjct: 444 TQNRRLAATNILLKNIAGRW-----------EPDNPDAVKAMKE 476 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 289 bits (739), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 184/487 (37%), Positives = 271/487 (55%), Gaps = 31/487 (6%) Query: 12 KLKPLLAVLLASCALAACSVGPDYVRPQMDTGPAVFKEGQN---------WKPAQPRDLA 62 K L+ ++A+ LA CS ++D P ++E WK A P D Sbjct: 3 KFNLALSTMVAALVLAGCSTARPPEELKLDL-PNAYREQSTVKANELDGAWKLAAPADNK 61 Query: 63 ADGKWWEMFGDPQLNALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGAS 122 G WW++FGD QL+ LI + SN NLA+A A + A A+ + A Sbjct: 62 DRGAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAI------------AGVVDAD 109 Query: 123 RASSGSAGSSSGNGGSTNGASSGGVRNSYTFSLTAAWEPDLWGKVRRDVESSQTSAQASA 182 R AG G+ GAS+ Y L+ A+E DL+G++ +++ A+ Sbjct: 110 RGVQVDAGVGPTRSGNAQGAST-----QYRAPLSFAYEVDLFGRLSDASRAARLDAEGQE 164 Query: 183 ADLAAARLSAQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGMVAKSDVI 242 A + L+ Q+ VAQ Y +R LD++ +LE TV Q +L +TQ ++ AG ++ DV Sbjct: 165 AAYRSVLLALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVA 224 Query: 243 QAQTQLKSAQASALDNGVTRAQVEHAIALLVGKTPAEFSLPRRPLTAVAPPVPQGIPSML 302 QA+T+ + A RAQ +HA+A+L+GK PAEF+LP PL A VP G+PS L Sbjct: 225 QAKTEWATTSAELEGVKRQRAQRDHALAILLGKAPAEFTLPVAPLAAAVVTVPSGLPSDL 284 Query: 303 LERRPDVAAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDWFTLPGRVWSLGP 362 LERRPD+A A+R++AA++A+IG AKAA+FP L L+ S GY+S+ D F R W LGP Sbjct: 285 LERRPDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGP 344 Query: 363 Q----LAQTIFDGGARAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAA 418 L+ +FDGG + +A ANY+ VA Y+ VL FQDVEDNL+ALR L+++ Sbjct: 345 VVGTILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQ 404 Query: 419 VQHEALLAARQAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAK 478 + +A+ +A+ A L +Y+ G+ SY VI AQ ++LS++ + + +R ASV L + Sbjct: 405 FEEQAVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIR 464 Query: 479 ALGGGWD 485 ALGGGW+ Sbjct: 465 ALGGGWE 471 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 260 bits (665), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 181/479 (37%), Positives = 264/479 (55%), Gaps = 9/479 (1%) Query: 11 FKLKPLLAVLLASCALAACSVGPDYVRPQMDTGPAVFKEGQNWKPAQPRDLAADGKWWEM 70 + P A LLA L C+VGPDY RP A +K W+ + PRD G WWE+ Sbjct: 3 LRRTPAFASLLALLILGGCAVGPDYQRPDAPVAQA-WKTEAGWQASNPRDGELKGAWWEI 61 Query: 71 FGDPQLNALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGASRASSGSAG 130 F D +LNAL Q + Q + +A+A A A + S++ P + A AG++R + SA Sbjct: 62 FRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNRT-SAE 120 Query: 131 SSSGNGGSTNGASSGGVRNSYTFSLTAAWEPDLWGKVRRDVESSQTSAQASAADLAAARL 190 N S N S V+N + + T ++E DL+G+VRR E + +AQ + AD RL Sbjct: 121 RPLTNYNSQN---SSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTRL 177 Query: 191 SAQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGMVAKSDVIQAQ--TQL 248 A++A DYL LR DA+ +L+ T+ A ++L ++ G + D+ Q Q T Sbjct: 178 VLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTAA 237 Query: 249 KSAQASALDNGVTRAQVEHAIALLVGKTPAEFSLPRRPLTAVAPPVPQGIPSMLLERRPD 308 Q + L + RA+ ++AIA LVG +F LP AP +P P+ LLERRPD Sbjct: 238 TQTQLTLLQD--QRARYQNAIATLVGVPAPDFKLPVNLAVTTAPAIPLTAPAALLERRPD 295 Query: 309 VAAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDWFTLPGRVWSLGPQLAQTI 368 +AAAER +AAANA+IGVA++AYFPSL LS G ++ S+ F+ P +WS+G Q I Sbjct: 296 IAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGVSATQMI 355 Query: 369 FDGGARAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQHEALLAAR 428 FDGG +A D A A Y + Y+Q+VL A Q+V+D L + L Q A +A Sbjct: 356 FDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAADSAD 415 Query: 429 QAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGWDEH 487 +++ L T++Y++G + + V+ AQ T LS + + + +R+ +V L KALGGGW H Sbjct: 416 RSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGGWHAH 474 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 198 bits (504), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 146/477 (30%), Positives = 245/477 (51%), Gaps = 16/477 (3%) Query: 13 LKPLLAVLLASCALAACSVGPDYVRPQMDTGPAVFKEGQNWKPAQPRDLAADGKWWEMFG 72 +K + LLA+ L+ACS+ P YVRP P G K + A D W F Sbjct: 1 MKTITLALLAAGVLSACSMAPKYVRPD---APVAADYGVPSKADNNQVRAVDIGWRNFFT 57 Query: 73 DPQLNALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGASRASSGSAGSS 132 DP+L LI +N++L +A A AL + PTL+ +A SRA ++ S+ Sbjct: 58 DPRLQVLIGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISN 117 Query: 133 SGNGGSTNGASSGGVRNSYTFSL-TAAWEPDLWGKVRRDVESSQTSAQASAADLAAARLS 191 +G S V ++Y L AA+E D +G+VR +++ + ++ AA++S Sbjct: 118 TG---------SSVVSSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQIS 168 Query: 192 AQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGMVAKSDVIQAQTQLKSA 251 ++VA+ YL R QQ L T ++ + ++++ ++ G + D+ + L++A Sbjct: 169 LVSEVAKAYLSERSFAEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTA 228 Query: 252 QASALDNGVTRAQVEHAIALLVGKTPAEFSLPRRPLTA--VAPPVPQGIPSMLLERRPDV 309 +A+ L RAQ +A+ LLVG+ + P + L++ + +P G+PS LL +RPD+ Sbjct: 229 RAAELLAQRQRAQAMNALTLLVGQPLTDLP-PAQALSSQTILTDIPAGLPSDLLTQRPDI 287 Query: 310 AAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDWFTLPGRVWSLGPQLAQTIF 369 +AE+ + +ANA IG A+AA+FP ++L+A G S+ + F R WS PQL IF Sbjct: 288 RSAEQTLLSANANIGAARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIF 347 Query: 370 DGGARAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLAALRILEQEAAVQHEALLAARQ 429 D G + A D VA Y++++ AF++V D L A +L+Q+ Q A + Sbjct: 348 DAGRNRGNLNLAEVRKDIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAE 407 Query: 430 AVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRMAASVLLAKALGGGWDE 486 T +++ G S ++V+ AQ +A+L+ + + R+ +V L ++LGGG E Sbjct: 408 RFKFATQRFQNGIASSLDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGGLVE 464 >gi|152981337|ref|YP_001351975.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 530 Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 146/500 (29%), Positives = 230/500 (46%), Gaps = 46/500 (9%) Query: 29 CSVGPDYVRPQMDTGPAV-------------FKEGQNWKPAQPRDLAADGKWWEMFGDPQ 75 C+VGPDY RP++ A G + +D+ AD WW++F PQ Sbjct: 21 CAVGPDYKRPELTPSKAFSPTPLPTATTTAPVSGGNAQRFVLTQDIQAD--WWKLFRSPQ 78 Query: 76 LNALIAQVDISNQNLALAEANFRSAVALVQSSRSAYSPTLSASAGASRASSGSAGSSSGN 135 LNALI + +N + A+A R A V + + + PT+S G + A + AG+ GN Sbjct: 79 LNALIEKAFAANPTIESAQAALRVAQENVYAQQGFFFPTVSV--GYTPARTKIAGNLGGN 136 Query: 136 --GGSTNG----------ASSGG--------VRNSYTFSLTAAWEPDLWGKVRRDVESSQ 175 G NG A+ GG + N +T LT + PD++G RR VE+ + Sbjct: 137 SPGVQGNGTVISTVANPSAAEGGKAPFNAPVIYNFHTTQLTVGFTPDVFGANRRQVETLE 196 Query: 176 TSAQASAADLAAARLSAQAQVAQDYLQLRVLDAQQQLLEDTVQAYQRSLQVTQNQYAAGM 235 A+ L AA ++ + V +Q +L Q +++ + + ++S+++ + Q+ AG Sbjct: 197 AQAKYQQLQLEAAYITLASNVTAAAIQEALLREQISIVQSIIASNEKSVEIVERQFKAGY 256 Query: 236 VAKSDVIQAQTQLKSAQASALDNGVTRAQVEHAIALLVG-----KTPAEFSLPRRPLTAV 290 ++ D+ QT L A+ Q + + L G P F L L Sbjct: 257 ASRLDLSLQQTTLLQAKEQLPPLQKQFEQTRNLLRALAGGMQDSDLPESFDLASLQLPE- 315 Query: 291 APPVPQGIPSMLLERRPDVAAAERRVAAANAKIGVAKAAYFPSLTLSASGGYQSSSFSDW 350 +P +PS L+++RPDV AAE ++ AA+A+IGVA A P ++ + G +S FS Sbjct: 316 --DLPLSLPSQLIDQRPDVRAAEEQLHAASAQIGVALANRLPQFSIDGTWGGAASKFSQM 373 Query: 351 FTLPGRVWSLGPQLAQTIFDGGARAAATDQAIANYDGTVATYKQTVLTAFQDVEDNLAAL 410 F GR + L ++ + DGG A +Y A YK+TV+TAFQ+V D L A+ Sbjct: 374 FWNSGRFFELAANISMPLLDGGVLRHRQRAAEESYKQAAAQYKETVITAFQNVADTLHAI 433 Query: 411 RILEQEAAVQHEALLAARQAVTLVTNQYKAGTVSYVNVITAQATALSAELTSLNILNRRM 470 + E A+ +TL Q+ G + V +I A+ A L R+ Sbjct: 434 HADAEALKASAELADTAKTTLTLTQKQHARGYIDRVVLINAEQGYRQAALNVAQARAMRL 493 Query: 471 AASVLLAKALGGGWDEHSLD 490 + L +ALGGGW H +D Sbjct: 494 GDTAALFQALGGGW-WHRVD 512 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 862,923 Number of extensions: 27772 Number of successful extensions: 133 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 12 Length of query: 513 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 426 Effective length of database: 899,382 Effective search space: 383136732 Effective search space used: 383136732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)