BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1360.p (513 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 365 e-102 gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 160 2e-40 gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 138 9e-34 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 132 7e-32 gi|152981910|ref|YP_001352754.1| multidrug efflux system transme... 79 6e-16 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/471 (45%), Positives = 283/471 (60%), Gaps = 34/471 (7%) Query: 1 MTNTPNPGQPSPSHPT-SRGSILRRWWFWVLVAALAAGGGYTLW-----SKKRAQQEQMA 54 MT P PS P SR RR WVL+ +AAG G+ W + K AQ Sbjct: 1 MTANSEASNPPPSRPNRSRTGKTRRTLIWVLIILIAAGLGFWWWKSPSSANKAAQGNGGG 60 Query: 55 GMGGPGGHFGPGGPGGRRPGAGAFAGPAMPVGVAVARVQNVDVFLNGLGAVTPTATATVR 114 GGP PV V AR Q++ V +N +G++ TA VR Sbjct: 61 RFGGPNM--------------------VQPVSVQEARRQDIRVTVNAIGSINAANTAVVR 100 Query: 115 ARVDGQLMKLYYKEGQVVKAGDLLAEIDPRALQAALTQAEGQLAHDRALLASARLDLKRY 174 +V G L ++ +KEGQ V+AG LLA+IDPRA QA L QAEG LA D+A L +AR+DL RY Sbjct: 101 VQVSGVLQQINFKEGQQVQAGQLLAQIDPRAFQATLGQAEGVLARDKAQLDNARIDLARY 160 Query: 175 QTLLSQDSIASQQVDTQMALVKQYEGTVKADEGNVASARLQLSFTRVTAPISGRLGLRQA 234 + LLS+D+I QQ+DTQ ALV+Q EGTVK+D+G V SA+LQLS+TRVTAPI+GR+GL+Q+ Sbjct: 161 KDLLSKDAIPKQQLDTQEALVRQLEGTVKSDQGTVDSAKLQLSYTRVTAPIAGRVGLKQS 220 Query: 235 DVGNNVTTSDTNGLVIITTLQPITAIFSIPEDNIPQVLQQLQSGRKLPAQAWDREQKNKL 294 D+GN V +DTNG+VIIT +PI +FS+P N+P + +L++ + +AWDR K KL Sbjct: 221 DLGNVVQPADTNGVVIITQTRPIALVFSVPSANVPAITARLRANETVAVEAWDRTGKTKL 280 Query: 295 ADGVLLTIDNQVDATTGTVKLKAQFPNTDYALFPSQFVNIRLQLKTDEGATVIPTAAIQR 354 A G + T+DN +D TT T+K+KA FPN D ALFP+Q V++ +QL + +P AA+ R Sbjct: 281 ATGQVATVDNAIDVTTDTIKVKALFPNLDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLR 340 Query: 355 GAKGLFVYVVKQDNTVTVRPVKTGTVQDDLSVITDGVKPGETVVIDGIDRLREGAKVEAV 414 G++G +VYVV D+TV+ R VK G + I ++ GE VVIDG DRLREG KVE + Sbjct: 341 GSQGFYVYVVNADSTVSTRVVKPGAIDSGWMAIEAKLEAGEKVVIDGTDRLREGGKVEVI 400 Query: 415 TRGGADDPANKLTTENPDARHHGRRGQGGEAGQ--GGMSPEERQKRWAEIN 463 A DP + P RR E + MSPEER + W + N Sbjct: 401 ----AADPKQRAGASAPSPESK-RRNIPPEMAEKLKNMSPEER-RAWFQQN 445 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/313 (33%), Positives = 163/313 (52%), Gaps = 9/313 (2%) Query: 110 TATVRARVDGQLMKLYYKEGQVVKAGDLLAEIDPRALQAALTQAEGQLAHDRALLASARL 169 A VRARV G ++K ++EG VKAG LL +IDP LQA A+ +A A LA+A Sbjct: 63 VAEVRARVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLATAEQ 122 Query: 170 DLKRYQTLLSQDSIASQQVDTQMALVKQYEGTVKADEGNVASARLQLSFTRVTAPISGRL 229 KRY+ L+ ++++ Q+ D A KQ + + + +ARL L + VT+PISGR+ Sbjct: 123 KAKRYKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPISGRI 182 Query: 230 GLRQADVGNNVTTSDTNGLVIITTLQPITAIFSIPEDNIPQVLQQLQSGRKLPAQAWDRE 289 G G V D L I+ + PI + + + ++ + + G KL + Sbjct: 183 GRALVTEGALVGQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEG-KLKSAGKGAA 241 Query: 290 QKNKLAD--------GVLLTIDNQVDATTGTVKLKAQFPNTDYALFPSQFVNIRLQLKTD 341 + + D G LL D VD ++G+V L+A+ PN D L P +V R++ D Sbjct: 242 KVTLVTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQAVD 301 Query: 342 EGATVIPTAAIQRGAKGLFVYVVKQDNTVTVRPVKTGTVQDDLSVITDGVKPGETVVIDG 401 E A +P A+ R G V VV D V RPV+TG+ +ITDG+K G+ V+++G Sbjct: 302 ENAITVPQQAVLRTPGGSAVMVVGADGKVASRPVQTGSSSGTAWIITDGLKEGDQVIVEG 361 Query: 402 IDRLREGAKVEAV 414 + +++ GA V+ V Sbjct: 362 LQKVQPGATVKPV 374 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 180/345 (52%), Gaps = 11/345 (3%) Query: 70 GRRPGAGAFAGPAMPVGVAVARVQNVDVFLNGLGAVTPTATATVRARVDGQLMKLYYKEG 129 GR A A A+ V VA ++V + + G V +R R+ G + +++++G Sbjct: 33 GRAEKTQAAAPAAVSVTVASVLERSVTEWDDFSGRVEAVERVEIRPRISGTIDAVHFQDG 92 Query: 130 QVVKAGDLLAEIDPRALQAALTQAEGQLAHDRALLASARLDLKRYQTLLSQDSIASQQVD 189 Q+VK G LL IDPR +A L +AE A +A LA A+ +L+R + LL + ++A +++D Sbjct: 93 QLVKKGALLFTIDPRPYKAELARAEAARAGAQARLALAKTELERTKRLLEERAVAQRELD 152 Query: 190 TQMALVKQYEGTVKADEGNVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTN-GL 248 T+ +++ + +KA + V +ARL L +T +TAP+SGR+ + VGN V T T L Sbjct: 153 TRENAMQEADANLKATDAAVLTARLNLQYTEITAPVSGRVSRAEITVGNLVATGPTAPTL 212 Query: 249 VIITTLQPITAIFSIPEDNIPQVLQQLQSG-------RKLPAQAWDREQKNKLADGVLLT 301 + ++ P+ F I E P ++ +G K+P ++ G + + Sbjct: 213 TTVVSVSPVYVNFEIDE---PTYIRYAGNGTVGNSGVSKIPVSIGLTSEEGYPRTGNVKS 269 Query: 302 IDNQVDATTGTVKLKAQFPNTDYALFPSQFVNIRLQLKTDEGATVIPTAAIQRGAKGLFV 361 DN++D +GT++++A F N D L P + +R + A +I A+ +V Sbjct: 270 FDNRLDTGSGTIRVRAVFNNEDGTLTPGMYARVRTGDANAKNALLIDDKAVGTDQDKKYV 329 Query: 362 YVVKQDNTVTVRPVKTGTVQDDLSVITDGVKPGETVVIDGIDRLR 406 VV DN VT RPV G + D L ++ G++ E +V++G+ R+R Sbjct: 330 MVVSADNKVTYRPVSLGPIVDGLRIVRSGLQKDERIVVNGLQRIR 374 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 103/339 (30%), Positives = 174/339 (51%), Gaps = 19/339 (5%) Query: 85 VGVAVARVQNVDVFLNGLGAVTPTATATVRARVDGQLMKLYYKEGQVVKAGDLLAEIDPR 144 V +A + + + +N G VT +T VR +V + ++ KEGQ VKAG LL +D R Sbjct: 41 VKTVIATQKTIPITVNANGYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDER 100 Query: 145 ALQAALTQAEGQLAHDRALLASARLDLKRYQTLLSQDSIASQQVDTQMALVKQYEGTVKA 204 + Q+ + +A +LA +A LA A LKR Q LL+++ ++ VDT V T +A Sbjct: 101 SDQSNVAKASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTARNKVDALRNTTRA 160 Query: 205 DEGNVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDTNGLVIITTLQ--PITAIFS 262 ++ + S+ + LS ++ A ISGR+G+ G + + G V++T +Q PI F+ Sbjct: 161 NQAAIQSSSVALSDNQIKAGISGRIGVINVHPG---SLAQPTGTVMVTIVQIDPIMISFT 217 Query: 263 IPEDNIPQVLQQLQSGR-----KLPAQAWDREQKNKLADGVLLTIDNQVDATTGTVKLKA 317 +PE + + G +LP Q ++ G L IDN D +GT+++KA Sbjct: 218 LPERELANIRATYPQGNAPVHAQLPGQ--------EVLTGKLTFIDNLADTQSGTIRMKA 269 Query: 318 QFPNTDYALFPSQFVNIRLQLKTDEGATVIPTAAIQRGAKGLFVYVVKQDNTVTVRPVKT 377 +F N + L+P ++N+ + + A ++P A+ G VYVV+ D+TV + Sbjct: 270 EFANAEQKLWPGSYINVSMVSREVPDAVLVPAQAVVTGPVDKLVYVVQPDDTVKEEKISV 329 Query: 378 GTVQDDLSVITDGVKPGETVVIDGIDRLREGAKVEAVTR 416 ++ + ++ GVK G VV++G LR G K+ V + Sbjct: 330 LAIEGGQAAVS-GVKAGSRVVVEGTKNLRPGTKIREVKK 367 >gi|152981910|ref|YP_001352754.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 570 Score = 79.3 bits (194), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 127/290 (43%), Gaps = 39/290 (13%) Query: 89 VARVQNVDV--FLNGLGAVTPTATATVRARVDGQLMKLYYKEGQVVKAGDLLAEIDPRAL 146 VA VQ D+ + G V P V A+V GQL KLY + G VVK GDLLAEIDP Sbjct: 51 VAEVQRGDIQDLVTATGTVQPLEYVDVGAQVSGQLKKLYIEVGSVVKEGDLLAEIDPTVF 110 Query: 147 QAALTQAEG----QLA--HDR-ALLASARLDLKRYQTLLSQDSIASQ------------- 186 A + QLA DR + LA A L R + L++ D+ ++ Sbjct: 111 LATVDARRAGLRNQLATMKDRESQLALATLQYNRQKNLMAADATTTESLQTAEATLRSAK 170 Query: 187 -QVDTQMALVKQYEGTVKADEGNVASARLQLSFTRVTAPISGRLGLRQADVGNNVTTSDT 245 Q+D A ++Q + T++ADE N L++ ++ AP+ G + A G + + T Sbjct: 171 AQIDALQAQIEQTQSTLRADEAN-------LNYAKIYAPMDGTVVSLTARQGQTLNANQT 223 Query: 246 NGLVI-ITTLQPITAIFSIPEDNIPQVLQQLQSGRKLPAQAWDREQKNKLADGVLLTIDN 304 ++ I L +T + E + +L+ G ++ + + G L ++ Sbjct: 224 APTILRIADLSTMTVQTQVSEAEV----GKLRKGMEVYFTTLGSQGRRWY--GALRKVEP 277 Query: 305 QVDATTGTVKLKAQF--PNTDYALFPSQFVNIRLQLKTDEGATVIPTAAI 352 T V A F PN + AL PS + T A ++PTAA+ Sbjct: 278 TPTVTNNVVLYNALFDVPNKNQALMPSMTTQVFFIAATARDALLVPTAAV 327 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 883,169 Number of extensions: 31175 Number of successful extensions: 120 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 110 Number of HSP's successfully gapped: 11 Length of query: 513 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 426 Effective length of database: 899,382 Effective search space: 383136732 Effective search space used: 383136732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)