BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1358.p (245 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981322|ref|YP_001355016.1| two components system response ... 316 7e-88 gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 195 3e-51 gi|152981303|ref|YP_001354918.1| transcriptional regulatory prot... 175 3e-45 gi|152980160|ref|YP_001353976.1| phosphate regulon two-component... 131 3e-32 gi|152981360|ref|YP_001351713.1| two-components system response ... 116 1e-27 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 316 bits (810), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 160/239 (66%), Positives = 189/239 (79%), Gaps = 3/239 (1%) Query: 1 MDTNAHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGNEMRRVLEESRVDLIVLDLTLPG 60 M+ N HIL+VDDDR+IR LLA YL+ NG+RT A NG +MR VLE+ VDLIVLDL LPG Sbjct: 1 MENNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPG 60 Query: 61 EDGLTICRNLRATS--SVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSV 118 EDGLT+CR LRA ++PV+MLTAR E DRI+GLEMGADDYL+KPF RELFARIRSV Sbjct: 61 EDGLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSV 120 Query: 119 LRRTQALPPNMAQPDVAA-MRFAGWTLDLTARHLLNQDGVVVALSGAEFRLLKVFLDHPN 177 LRR + LP N+ + A + F W LD TARHLL+ G +VALSGAE+RLL+VFLDHP Sbjct: 121 LRRARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQ 180 Query: 178 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATAV 236 RVL RDQLL LTQGR++DPFDRS+D+ ISRLRQ+L DDAR P IKT+R+EGYV + AV Sbjct: 181 RVLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 195 bits (495), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 108/212 (50%), Positives = 134/212 (63%), Gaps = 3/212 (1%) Query: 23 YLDSNGLRTLTATNGNEMRRVLEESRVDLIVLDLTLPGEDGLTICRNLR-ATSSVPVIML 81 YL G +TA N M ++ R DL+VLDL LPGEDGL+ICR LR A P+IML Sbjct: 31 YLSEQGFNVVTAENAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 90 Query: 82 TARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQALP-PNMAQPDVAAMRFA 140 TA+GE +DRI+GLEMGADDYLAKPF PREL ARI +VLRR P + F Sbjct: 91 TAKGEDVDRIVGLEMGADDYLAKPFNPRELVARISAVLRRVGPEEIPGAPSETPQSFTFG 150 Query: 141 GWTLDLTARHLLNQDGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRS 200 + LDL R L D V L+ EF +LKVF H + L+R++L+EL +GRE + FDRS Sbjct: 151 EFVLDLGTRTLKKNDE-TVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRS 209 Query: 201 VDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 232 +D+QISRLR+ + D TP I+TV GYV Sbjct: 210 LDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 241 >gi|152981303|ref|YP_001354918.1| transcriptional regulatory protein OmpR [Janthinobacterium sp. Marseille] Length = 233 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 145/235 (61%), Gaps = 13/235 (5%) Query: 9 VVDDDRDIRTLLAEYLDSNGLRTLTATNGNE----MRRVLEESRVDLIVLDLTLPGEDGL 64 +++DD+ + +++A YL+ NG + +E +++ +++LDL LP DGL Sbjct: 1 MIEDDQRLASMVATYLNQNGFEVTHSGTASEGLQQLQQAAATQAFAIVLLDLMLPDADGL 60 Query: 65 TICRNLRAT----SSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 +CR +R +S+P++MLTA+G+P+DR++GLE+GADDY+ KPFEPREL AR+R+VLR Sbjct: 61 DVCRQIRGQTQPLASMPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 121 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLLNQDGVVVALSGAEFRLLKVFLDHPNRVL 180 R Q + N + +RF +DL AR ++ D ++ +F LL D RVL Sbjct: 121 RQQGVATNNER----VLRFGRLEIDLDAR-VIRLDDQEKPVTSYQFNLLAAMADRAGRVL 175 Query: 181 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATA 235 +R+QL+++ +G + FDRS+D+ I RLR + DD + P I TVR GYV A A Sbjct: 176 SREQLMDVVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFAKA 230 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 131 bits (330), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 127/231 (54%), Gaps = 13/231 (5%) Query: 7 ILVVDDDRDIRTLLAEYLDSNGLRTLTATNGNEMRRVLEESRVDLIVLDLTLPGEDGLTI 66 IL+V+D+ I L+ L G N + +++ LI+LD LP + GL + Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 67 CRNLRA---TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQ 123 +RA + +P+IMLTA+ D+I GL+ GADDY+ KPF PREL ARI ++LRR Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127 Query: 124 ALPPNMAQPDVAAMRFAGWTLDLTARHLLNQDGVVVALSGAEFRLLKVFLDHPNRVLNRD 183 P +Q M +LD + + D + + AEF+LLK FL HP+RV +R Sbjct: 128 ---PEHSQ---TLMTAGNISLDPVSCSVSMNDE-KIDIGHAEFKLLKFFLAHPDRVFSRS 180 Query: 184 QLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLAT 234 QLL+ G +R+VD+ + RLR+ L D +IKTVR+ GY+L+T Sbjct: 181 QLLDKVWGDHVVIEERTVDVHVLRLRKALKD---AEHLIKTVRSVGYMLST 228 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 119/227 (52%), Gaps = 11/227 (4%) Query: 7 ILVVDDDRDIRTLLAEYLDSNGLRTLTATNGNEMRRVLEESRVDLIVLDLTLPGEDGLTI 66 IL+++D+ L L G A NG + + + D IVLD+ LPG DG+ + Sbjct: 3 ILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGIEV 62 Query: 67 CRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQALP 126 + LR S PVIMLTARGE DRI GL+ GADDYL KPF EL AR++++ RR + Sbjct: 63 LQALRRQKSTPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGRP-- 120 Query: 127 PNMAQPDVAAMRFAGWTLDLTARHLLNQDGV-VVALSGAEFRLLKVFLDHPNRVLNRDQL 185 + +R A +DL AR + GV + L+ EF LL H +VL++ + Sbjct: 121 -----QESTHIRIADLHIDLIARRAMR--GVRRLDLTAKEFALLAALARHRGQVLSKTVI 173 Query: 186 LELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 232 +E+ + V++ I RLR KL D+ ++ T+R GY+L Sbjct: 174 VEMVWDVNFESNTNVVEVAIKRLRAKL-DEPSEVKLLHTIRGMGYLL 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 557,636 Number of extensions: 22338 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 36 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 36 Length of query: 245 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 164 Effective length of database: 921,564 Effective search space: 151136496 Effective search space used: 151136496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)