BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1357.p (459 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982389|ref|YP_001355015.1| two-component sensor histidine ... 241 9e-65 gi|152982747|ref|YP_001353102.1| two-component sensor kinase Env... 142 5e-35 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 115 7e-27 gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing... 93 4e-20 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 91 2e-19 >gi|152982389|ref|YP_001355015.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 434 Score = 241 bits (614), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 165/446 (36%), Positives = 240/446 (53%), Gaps = 33/446 (7%) Query: 11 RIFVLLLAGIVMAVFATNWLAGNERRNTLRELRFQHLADRVEQFVRAVDELPLSQRSIVL 70 R+ ++L G+V+A + WL ER + L +L V V +D LP ++R+ L Sbjct: 16 RLMLILFIGLVVAHALSFWLIMRERTDATTGLMLGYLQQDVASSVALLDRLPAAERAAWL 75 Query: 71 ----QAAANFGFEARMVEDMNEAIDGPNASNTPLVEMLQARLGQDRKIAVQRENECPPLR 126 + +F E M A +T L M+ A + + P + Sbjct: 76 PRLERRTYSFSLEPGMAG---------RAPDTKLSSMIAASFVEAIGSHYRVTAHVVPGQ 126 Query: 127 PDDARARHHDTCRVIYISLHDHALMRLRLHQPGEAPALRGGSGPGGPFGLQYILLFLVLI 186 D +A+ + L D + + + G P + +LL L + Sbjct: 127 KDRVQAQ---------LELSDGMPLTIDMRPAGL---------PISDWLPLVLLLQLAAL 168 Query: 187 AMLAWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEIRQAAHAFNAMQARIRRQI 246 A + W+ R+ATRP+ QLA AA LG D+ + L E GP E+ +AA AFNAMQ RI + Sbjct: 169 AAVTWVGVRLATRPLAQLADAADTLGPDLRASRLPEDGPLEVARAAKAFNAMQGRINTYM 228 Query: 247 QHRTHMLAAITHDLQTPLTRMRLRLEKVADSQLQQKLIDDLGVMHGMVREGLDLARSM-D 305 R +LAAI+HDLQTP+TRMR+R + + DS+ ++KL DL M +V+EG+ AR++ Sbjct: 229 TERMQILAAISHDLQTPITRMRMRADMMDDSEQREKLNHDLKEMEVLVKEGVAYARTLHG 288 Query: 306 SSEKIQALDIDSLLDSVCADAADSGQDVSLQGSTRAFVMAQPGALRRCLTNLIDNACKYG 365 +SE +A+D D+LL+S+ D D+GQ++ L G ++ +P ALRR L NLIDNA K+ Sbjct: 289 TSEPPRAIDPDALLESLVFDYTDAGQELDLHGKVGHPIITRPNALRRVLINLIDNALKFS 348 Query: 366 KVARVTI-ALEQQKIAIRIRDQGPGIPEAELEAVFEPFYRLEASRSRDTGGTGLGLTIAL 424 V++ A + K I + D GPGIPE +LE VF+PFYR+EASR+RDTGGTGLGL IA Sbjct: 349 TQVEVSVSAGPEGKTTILVLDNGPGIPEEDLETVFQPFYRVEASRNRDTGGTGLGLAIAK 408 Query: 425 NIAENHHGQLRLRNLSEGGLEVLLEL 450 + + L L N + GGLE L L Sbjct: 409 QLTLAMNASLTLHNRATGGLEARLVL 434 >gi|152982747|ref|YP_001353102.1| two-component sensor kinase EnvZ [Janthinobacterium sp. Marseille] Length = 455 Score = 142 bits (357), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 160/292 (54%), Gaps = 16/292 (5%) Query: 172 GPFGLQYILL--FLVLIAML-AWLVARMATRPIRQLAQAASRLGSDIDHAPLAETGPTEI 228 G G+Q++ VL+++L A +++ + +P+ +L A + + APL E GPTEI Sbjct: 155 GSSGVQWLGWGAVTVLLSLLGALMISGLINQPLARLTAATRAIATGQRPAPLPERGPTEI 214 Query: 229 RQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVA-DSQLQQKLIDDL 287 R+A H+FN M + R R +LA I+HDL+TPL RM+L +E + + + DL Sbjct: 215 REANHSFNQMVDDLNRVESDRAVVLAGISHDLRTPLARMQLEVELAGLPADARAGMQSDL 274 Query: 288 GVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADSGQDVSLQGST--RAFVMA 345 M ++ + LD A+ DSS Q +D+ +L+ S +A QDV + + V+ Sbjct: 275 EQMDAIIGQFLDYAKPSDSSH-FQPIDMTALMHSAAQEALRM-QDVRINSKIDDKLVVLG 332 Query: 346 QPGALRRCLTNLIDNACKYGKVA---RVTIAL----EQQKIAIRIRDQGPGIPEAELEAV 398 ++R + NLI+NA +YGK+ V I L E K+ I + D G G+PEAE++ + Sbjct: 333 NAIDIKRVVNNLIENARRYGKLPGNDYVEIDLRCQAEGDKVIIEVTDHGAGVPEAEIDRL 392 Query: 399 FEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLSEGGLEVLLEL 450 PF R++++R + G GLGL I I + H G+L+L N GGL + + L Sbjct: 393 LRPFTRMDSARGQ-ANGAGLGLAIVDRIVKRHSGKLQLLNREGGGLVIHITL 443 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 115 bits (287), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 131/238 (55%), Gaps = 19/238 (7%) Query: 224 GPTEIRQAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLE-KVADSQ--LQ 280 G E+ + A +FN ARI + + +LA +H+L++PL R+R+ +E AD+Q ++ Sbjct: 198 GKDEVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLARIRMAVELMAADAQPEMR 257 Query: 281 QKLIDDLGVMHGMVREGLDLAR---SMDSSEKIQALDIDSLLDSVCA--DAADSGQDVSL 335 +L ++G + ++ E L +R + D+++ + +D+ +L+ CA DA Q V + Sbjct: 258 NELKRNIGELDQLIDEILLASRLDATADATQVFEPIDLTALVAEECARIDAQLETQSVEI 317 Query: 336 QGSTRAFVMAQPGALRRCLTNLIDNACKYGKVARVTIALEQ--QKIAIRIRDQGPGIPEA 393 G R LRR + NL++NA +YG + ++LE+ K+ +++ D GPG+P A Sbjct: 318 PGDAR--------LLRRMVRNLLENARRYGNGTAIDVSLEKTGNKVVLQVCDGGPGVPVA 369 Query: 394 ELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLSEGGLEVLLELP 451 E E +F PFYRL + R+ GG GLGL++ IA H G++ GG + LP Sbjct: 370 ERENIFAPFYRLPGASERE-GGVGLGLSLVQQIARAHGGEVVCTGREGGGSCFKVTLP 426 >gi|152982254|ref|YP_001352483.1| sensor kinase of copper sensing two-component system [Janthinobacterium sp. Marseille] Length = 480 Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 30/284 (10%) Query: 176 LQYILLFLVLIAML-AWLVARMATRPIRQLAQA-----ASRLGSDIDHAPLAETGPTEIR 229 L + L + +IA++ AW + RPIR++++ +SRL +D + P E+ Sbjct: 183 LWWATLIVSVIALIVAWCAVQWGHRPIRKVSRDIRAIRSSRLDVRLDPTEV----PIELA 238 Query: 230 QAAHAFNAMQARIRRQIQHRTHMLAAITHDLQTPLTRMRLRLEKVADSQLQQKL------ 283 + A +FN M RI + A I H+L+TP+T + ++ E VA SQ + Sbjct: 239 ELAASFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLVMQTE-VALSQSRSSAEYREIL 297 Query: 284 ---IDDLGVMHGMVREGLDLARSMDSSEKIQALDID------SLLDSVCADAADSGQDVS 334 +++ M M+ + L LA++ + + DI L D A A ++ ++ Sbjct: 298 YSNLEEFERMSRMISDMLFLAQTENDPHNLHLSDISIAAMIQDLFDYFEALAEEANITLT 357 Query: 335 LQGSTRAFVMAQPGALRRCLTNLIDNACKY---GKVARVTIALEQQKIAIRIRDQGPGIP 391 L+G+ A V A + R L+NLI NA +Y G V ++ ++Q + + + I Sbjct: 358 LEGNA-APVKADREMMLRALSNLISNAIQYSAPGSTVIVHLSQDKQVTTVSVENPAGQIA 416 Query: 392 EAELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLR 435 +L +F+ F+R + SR R G GLGL I +IAE H G ++ Sbjct: 417 REDLPKLFDRFFRTDPSRKRKASGAGLGLAIVKSIAEAHGGTVQ 460 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 110/228 (48%), Gaps = 27/228 (11%) Query: 249 RTHMLAAITHDLQTPLTRM--------RLRLEKVADSQ-LQQKLIDDLGVMHGMVREGLD 299 R +LAAI+HDL+TPLT + R + E A Q L L ++ M +V LD Sbjct: 671 RNSLLAAISHDLRTPLTALVGLSESLTRSKPELAAAQQELAHALHEEALRMGNLVTNLLD 730 Query: 300 LARSMDSSEKIQALDIDSLLDSVCADAADSGQDVSLQGSTRAFVMAQPGA---------L 350 +AR + S E L + V + + Q SL G + PG + Sbjct: 731 MAR-IQSGEVKLNLQWQQF-EEVVGSSLRAVQ--SLLGRHQVHTRLAPGLPLVNFDAVLI 786 Query: 351 RRCLTNLIDNACKYGKV-ARVTIA--LEQQKIAIRIRDQGPGIPEAELEAVFEPFYRLEA 407 R L NL++NA KY +++TIA L Q + + + D GPG+P + EA+FE F R E Sbjct: 787 ERVLCNLLENASKYTPAGSQITIAAELSGQYLDVAVYDNGPGLPPGQEEAIFEKFTRGE- 845 Query: 408 SRSRDTGGTGLGLTIALNIAENHHGQLRLRNLSEGGLEVLLELPTMTP 455 R T G GLGL I I E HHG +R + +GG ++ LP TP Sbjct: 846 -RESATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLPLGTP 892 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 915,740 Number of extensions: 33750 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 24 Length of query: 459 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 373 Effective length of database: 903,079 Effective search space: 336848467 Effective search space used: 336848467 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)