BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1356.p
         (342 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979774|ref|YP_001352535.1| tryptophanyl-tRNA synthetase II...   578   e-166

>gi|152979774|ref|YP_001352535.1| tryptophanyl-tRNA synthetase II
           [Janthinobacterium sp. Marseille]
          Length = 344

 Score =  578 bits (1491), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/343 (81%), Positives = 315/343 (91%), Gaps = 2/343 (0%)

Query: 1   MSSNATPSSTLP--VVLTGDRPTGPLHLGHYIGSLKSRVALQETARQFLLLADTQAMTDN 58
           MSSNA  ++     +VLTGDRPTGPLHLGHYIGSLKSR+ LQ+T +QF+LLADTQAMTDN
Sbjct: 1   MSSNAPSAAATSPAIVLTGDRPTGPLHLGHYIGSLKSRLELQDTHKQFILLADTQAMTDN 60

Query: 59  VGRHQKVTDNVLEVALDYLAVGIDPEKSTIFIQSQVRELYELSMVLLNLVTVSRLERNPT 118
           VGRHQ+VT+NVLEVALDYLAVGIDPEKSTIFIQSQ+ ELYELSMVLLNLVTVSRLERNPT
Sbjct: 61  VGRHQRVTENVLEVALDYLAVGIDPEKSTIFIQSQIPELYELSMVLLNLVTVSRLERNPT 120

Query: 119 IKEEIRLRGFERDIPAGFLTYPVSQAADITAFKGQLVPVGSDQLPMIEQTNELVRKFNAT 178
           IKEEIRLR FERDIPAGFLTYPVSQAADITAFK  LVPVG+DQLPMIEQTNELVRKFN+ 
Sbjct: 121 IKEEIRLRNFERDIPAGFLTYPVSQAADITAFKATLVPVGNDQLPMIEQTNELVRKFNSV 180

Query: 179 VDREVLVECKEVLSETGRLPGIDGKAKMSKSLGNSIALGATPAEIKQAVHRMYTDPNHLR 238
           V +++LVECKE+LS T RLPGIDGKAKMSKSLGNSIALGAT AEIK+AV+ MYTDPNHL+
Sbjct: 181 VGKDILVECKELLSATSRLPGIDGKAKMSKSLGNSIALGATAAEIKKAVNAMYTDPNHLK 240

Query: 239 VDDPGQVEGNVVFTFLDAFDPDREAVAELKAHYTRGGLGDSVVKRRLEGILQELLEPIRT 298
           V+DPGQV+GNVVF+FLDAFD D+ AV ELKAHY RGGLGDSVVKRRLE  LQ ++EPIRT
Sbjct: 241 VEDPGQVDGNVVFSFLDAFDEDKAAVEELKAHYRRGGLGDSVVKRRLEAQLQAMIEPIRT 300

Query: 299 RREEFAKDRGEVLAILKRGTERASAVAAQTMAEVNAALGLNYF 341
           RRE +A+D+GEVLA+LKRGTERA AVAA+T++EVNA++GLNYF
Sbjct: 301 RREAYAQDKGEVLAMLKRGTERARAVAAKTLSEVNASMGLNYF 343


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.134    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 752,499
Number of extensions: 30127
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 258
Effective length of database: 910,473
Effective search space: 234902034
Effective search space used: 234902034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)