BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1353.p
         (462 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980604|ref|YP_001354303.1| fumarate hydratase [Janthinobac...   709   0.0  

>gi|152980604|ref|YP_001354303.1| fumarate hydratase
           [Janthinobacterium sp. Marseille]
          Length = 462

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/462 (76%), Positives = 391/462 (84%)

Query: 1   MNHRMERDTFGLIEVPAERLWGAQTERSLHHFHISTERMPAELIVALAAVKRACAAVNRD 60
           M  R+ERDTFG IEV ++RLWGAQT+RSL HF ISTE+MP ELI+ALA VKRA A VN D
Sbjct: 1   MTTRIERDTFGPIEVDSQRLWGAQTQRSLEHFKISTEKMPQELIIALAEVKRAAAIVNLD 60

Query: 61  LGKLDGKKAEAIMAAADEVIAGKHPLEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGV 120
           LGKL   KA+AI  AA+EVI G+HPLEFPL+VWQTGSGTQSNMNMNEVLANRASELLGG 
Sbjct: 61  LGKLAKDKAQAIAQAAEEVIDGRHPLEFPLAVWQTGSGTQSNMNMNEVLANRASELLGGE 120

Query: 121 RGEDRLIHPNDDVNRGQSSNDIFPTAMHVAACMAVATHLIPSLHQLRATLADKSTRFADI 180
           RGE RL+HPNDDVN GQSSNDIFPTAM+VAA +AV+  L+P+   L+ATL  K+  FADI
Sbjct: 121 RGEKRLVHPNDDVNLGQSSNDIFPTAMYVAASVAVSKTLLPAATALQATLNGKAEEFADI 180

Query: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLDHAESAIIATLNAISELAAGGTAVGTGLNAHPE 240
           VKIGRTHLQDATPLTLGQEFSGYVAQL  + +AI A L  + +LA GGTAVGTGLN HPE
Sbjct: 181 VKIGRTHLQDATPLTLGQEFSGYVAQLAQSTAAIHALLPPLQDLAVGGTAVGTGLNTHPE 240

Query: 241 FGERVAAELAKYFGFPFKTAPNKFAALAGHDALVSAHGGLKTLAAAMMKIANDVRWLASG 300
           FG RVAAEL +  G  FK+A NKFAALA HDA+VS HGGLKTLAA+MMKIANDVRWLASG
Sbjct: 241 FGVRVAAELTQRTGVTFKSADNKFAALAAHDAMVSVHGGLKTLAASMMKIANDVRWLASG 300

Query: 301 PRSGLGEITIPENEPGSSIMPGKVNPTQCEAMTMLCAQVFGNDVALNIGGASGNFELNVF 360
           PRSGLGEI+IPENEPGSSIMPGKVNPTQ EA+TMLC QVFGNDVALN GGASGNFELNVF
Sbjct: 301 PRSGLGEISIPENEPGSSIMPGKVNPTQSEAVTMLCCQVFGNDVALNFGGASGNFELNVF 360

Query: 361 KPVIIHNFLQSVRLLADGMASFEEHCARGIEANHSRIGELMEKSLMLVTALAPHIGYDKA 420
           KP++ HNFLQSVRLLADG+ SF+EHCA GI AN  RI +LME+SLMLVTALAPHIGYDKA
Sbjct: 361 KPLLAHNFLQSVRLLADGIHSFDEHCAHGIVANRDRIADLMERSLMLVTALAPHIGYDKA 420

Query: 421 AKIAKQAHHDGTTLKQAALALGYVTEAQFAEWIKPEQMTRPG 462
           AKIAKQAH  G  LK+ ALALGYVT  +F  W+KP+ M  PG
Sbjct: 421 AKIAKQAHQQGANLKETALALGYVTSEEFDLWVKPQDMIHPG 462


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,029,085
Number of extensions: 39541
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 462
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 375
Effective length of database: 899,382
Effective search space: 337268250
Effective search space used: 337268250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)