BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1351.p
         (319 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980221|ref|YP_001352286.1| CobD/CbiB family protein [Janth...   444   e-126
gi|152980055|ref|YP_001352788.1| cobalamin biosynthesis protein ...   110   1e-25

>gi|152980221|ref|YP_001352286.1| CobD/CbiB family protein
           [Janthinobacterium sp. Marseille]
          Length = 318

 Score =  444 bits (1142), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/319 (71%), Positives = 262/319 (82%), Gaps = 1/319 (0%)

Query: 1   MTFLSILFALLIEQLKPLRADNPVYASIKSFAATIEGWFNAGQVHHGRLGWVVMVGALTV 60
           MTF SI FALLIEQLKPLRADNPVYA  ++ AA +EG FNAGQ HHGRL W +M+ A  +
Sbjct: 1   MTFFSIFFALLIEQLKPLRADNPVYAGARALAAKLEGSFNAGQAHHGRLAWALMIAAFCI 60

Query: 61  PVALVYWVLLHVSLVAAFAWNVLVVYMTLGFRHYSHYFTSIQMALNSGDEMTARTLLAEW 120
           PVAL+YW+ + +  +AA   NV VVY+TLGFRHYSHYFTSIQ+ALN+GDE TAR+LLAEW
Sbjct: 61  PVALLYWISVKLGPLAALIVNVGVVYLTLGFRHYSHYFTSIQLALNNGDEATARSLLAEW 120

Query: 121 TKLDTAGMDVSEISRIASERALITTHRHVFGVFFWFLMPVGPALAVMYRVAEYLARAWNE 180
           TK DTAGMDVSE++RIA E AL+TTHR+VFGVFFW L P+GP  AVMYRVAEYLAR WNE
Sbjct: 121 TKRDTAGMDVSEVARIAVETALVTTHRNVFGVFFWILTPLGPVGAVMYRVAEYLARVWNE 180

Query: 181 PDHMKFEAFGRFAAQAFYWIDWIPARLTASAFAVVGNFEDAIYAWRNFASRWDDEAVGII 240
           P   + E FGRFA+QAFYWIDWIPARLTA+AFAVVGNFEDAIYAWRNFA RW DEA+GII
Sbjct: 181 PKMAEREEFGRFASQAFYWIDWIPARLTAAAFAVVGNFEDAIYAWRNFAGRWQDEAIGII 240

Query: 241 LAAGGGAMGVRFGTEKQAAAGIILPADAATVDSMPEESDGLPGDTPSPRTLQSTVGLVWR 300
           L+AGGGAMG+R G   +  A +I PADAA VDS+  E++   G+  S R LQSTVGLVWR
Sbjct: 241 LSAGGGAMGIRLGAPVETVAEVI-PADAAMVDSINIETEAPLGEEASSRALQSTVGLVWR 299

Query: 301 ALLLWMFLLLLLSVAVWMG 319
           ALLLWM L+LLLS+A W+G
Sbjct: 300 ALLLWMLLVLLLSIAKWLG 318


>gi|152980055|ref|YP_001352788.1| cobalamin biosynthesis protein
           CobD [Janthinobacterium sp. Marseille]
          Length = 313

 Score =  110 bits (275), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 30  SFAATIEGWFNAG--QVHHGRLGWVVMVGALTVPVA--LVYWVLLHVSLVAAFAWNVLVV 85
           + A  IE  FN G  ++  G L W+++V    V VA  L +WV    +L A    + L++
Sbjct: 38  NLAIRIEKKFNTGGSRIARGALAWILVVAPF-VAVAWLLTFWVAQFDALFA-LGVHALLL 95

Query: 86  YMTLGFRHYSHYFTSIQMALNSGDEMTARTLLAEWTKLDTAGMDVSEISRIASERALITT 145
           Y +LG R    +   I  AL  GD   AR L A     DT     +++++   E  L   
Sbjct: 96  YFSLGLRSLRDHTLPIAHALMDGDLAQARLLTARIVSRDTTQAQEADLAKAGVESLLENG 155

Query: 146 HRHVFGVFFWFLMPVGPALAVMYRVAEYLARAWNEPDHMKFEAFGRFAAQAFYWIDWIPA 205
           +  VFG  FWF +  GP + V++R+A  L   W      +F  FGR AA+    +++IPA
Sbjct: 156 NDAVFGTLFWFAVAGGPGV-VLFRLANTLDAMWGYRTQ-RFNEFGRVAARIDDVLNFIPA 213

Query: 206 RLTASAFAVVGNFEDAIYAWRNFASRWDDEAVGIILAAGGGAMGVRFG 253
           RLTA ++AV+GN   A   WR  A  W     G +++AG GA+G+  G
Sbjct: 214 RLTALSYAVLGNTRQAWRCWRAQAPAWSSPNAGPVMSAGAGALGISLG 261


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.137    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 691,026
Number of extensions: 25078
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 236
Effective length of database: 914,170
Effective search space: 215744120
Effective search space used: 215744120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)