BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1350.p
         (223 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982360|ref|YP_001352285.1| hypothetical protein mma_0595 [...   279   1e-76

>gi|152982360|ref|YP_001352285.1| hypothetical protein mma_0595
           [Janthinobacterium sp. Marseille]
          Length = 222

 Score =  279 bits (713), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 139/221 (62%), Positives = 172/221 (77%), Gaps = 5/221 (2%)

Query: 4   FDPVNLPVDTVAGESALEAARLNADWLRQRFADPPRWEPEHSGDQMARMAETRGRFRLAS 63
           FDP  LPVD++ GE A+ + RL  + LR RF +PP W PE + +++ R     G    A+
Sbjct: 6   FDPELLPVDSLGGEEAVASDRLRDEALRARFLNPPPWSPEITVERLVR--PMSGPLTEAA 63

Query: 64  VLIPIVLREQ-GMTVLFTRRTADLKDHAGQISFPGGRREDYDGSAIETALRETEEEIGLA 122
           VL+PIVLRE+ G T+LFT+R A L DHAGQISFPGGR E YD SAI TALRETEEE+G++
Sbjct: 64  VLLPIVLREENGPTILFTQRAAHLNDHAGQISFPGGRMESYDESAIATALRETEEEVGIS 123

Query: 123 RQHIEVIGSLPDYFTGTGYRVTPVAGLIQPPFEAVGDPREVAEIFEVPLAFLMDGVNHQR 182
           R HI+VIG+LP+Y TGTG+RVTPV G+++PPFE   DP EVAE+FEVPLAFLMDG++HQR
Sbjct: 124 RSHIDVIGTLPEYHTGTGFRVTPVVGIVKPPFEVNADPFEVAEVFEVPLAFLMDGMHHQR 183

Query: 183 RSVELPAPVGRRSFYTMPYERYFIWGATAGMLRNLFHFLRS 223
           R+ E     G R+FY MPY+R+FIWGATAGMLRNLFHFLR+
Sbjct: 184 RTAEF--VTGSRTFYVMPYDRFFIWGATAGMLRNLFHFLRA 222


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 570,250
Number of extensions: 24722
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 143
Effective length of database: 925,261
Effective search space: 132312323
Effective search space used: 132312323
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)