BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1348.p
         (257 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980226|ref|YP_001352283.1| tRNA (guanine-N(1)-)-methyltran...   410   e-116

>gi|152980226|ref|YP_001352283.1| tRNA
           (guanine-N(1)-)-methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 249

 Score =  410 bits (1055), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 188/248 (75%), Positives = 218/248 (87%)

Query: 1   MQFDVVTLFPEMFAALTQSGITRRALEQQRWGLQLWNPREFTTDNHRTVDDRPYGGGPGM 60
           MQFDVVTLFPEMF A+TQSGITRRA EQ++  L LWNPR+FT+D HRTVDDRPYGGGPGM
Sbjct: 1   MQFDVVTLFPEMFTAITQSGITRRAFEQKKCALSLWNPRDFTSDKHRTVDDRPYGGGPGM 60

Query: 61  VMLAKPLQAAIEAAQQRQQTLGLAKPRVIYLSPQGAPLTHERVVRLSQDSGAVLLCGRYE 120
           VM+ KPL+AA++AA+ RQ   GLA PRV+YLSPQG  LTHERV++L+ + G VLLCGRYE
Sbjct: 61  VMMVKPLEAAVQAAKARQTEQGLAAPRVVYLSPQGKALTHERVMQLTTEPGLVLLCGRYE 120

Query: 121 AIDQRLLDKCVDEEISIGDFVLSGGELPAMALMDAVIRLLPGALNDSASAVEDSFVNGLL 180
           A+DQR LD CVDEEIS+GDFVLSGGE+PAMALMDAVIR LPG L+D ASAVEDSFVNGLL
Sbjct: 121 AVDQRFLDSCVDEEISLGDFVLSGGEIPAMALMDAVIRQLPGVLHDDASAVEDSFVNGLL 180

Query: 181 DSPHYTRPEVYEGEPVPSILLGGHHAEIQKWRRQRALEATQAKRPDLIIRAREQGLLSKA 240
           D PHYTRPEVYEG  VP++L+GGHH EI+KWRR+RALEAT  KRPDLI++ARE GLL+++
Sbjct: 181 DCPHYTRPEVYEGAAVPAVLMGGHHVEIEKWRRERALEATARKRPDLIVKAREAGLLTRS 240

Query: 241 DEKFLGSL 248
           DEKFL S+
Sbjct: 241 DEKFLSSM 248


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 604,045
Number of extensions: 24198
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 176
Effective length of database: 921,564
Effective search space: 162195264
Effective search space used: 162195264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)