BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1345.p
         (140 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982371|ref|YP_001352280.1| hypothetical protein mma_0590 [...   127   3e-31
gi|152982172|ref|YP_001354763.1| hypothetical protein mma_3073 [...   112   9e-27

>gi|152982371|ref|YP_001352280.1| hypothetical protein mma_0590
           [Janthinobacterium sp. Marseille]
          Length = 116

 Score =  127 bits (318), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 22/134 (16%)

Query: 7   HKNKTLSTFLAAVGGSIGLHRFYLYGNRDRFGWLHILAIPLSLGLMAAQPSTPKLFTGLP 66
           HKNKTLST LA + G +GLHRFYLYG +D + W+HI+  P S+            F G  
Sbjct: 5   HKNKTLSTLLATLFGGLGLHRFYLYGKKDLWAWIHIICFPFSI------------FAGF- 51

Query: 67  FVLSALIACLEALVIGLTPDDKWDARHNAGSGKHSESHWILAVILVLTVGLGAMGVIALL 126
                    + ALVIGLTPD+KWDA+HNA SG+ S+S W + V++VLT  LG+  +IA +
Sbjct: 52  ---------IGALVIGLTPDEKWDAQHNAHSGRTSDSGWAVIVLVVLTFALGSTALIATI 102

Query: 127 ARSFDLLFTGGAFG 140
           AR FDL  TGGAFG
Sbjct: 103 ARGFDLYLTGGAFG 116


>gi|152982172|ref|YP_001354763.1| hypothetical protein mma_3073
           [Janthinobacterium sp. Marseille]
          Length = 145

 Score =  112 bits (280), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 2/139 (1%)

Query: 4   APRHKNKTLSTFLAAVGGSIGLHRFYLYGNRDRFGWLHILA-IPLSLGLMAAQ-PSTPKL 61
           + +H +KT +T LA + G  G HRFYLYG +D + W ++ A +  +L L+ AQ P +  +
Sbjct: 7   SSKHLSKTSATLLAVLLGGTGAHRFYLYGAKDFWAWTYLAAFLIFALALILAQAPHSIAV 66

Query: 62  FTGLPFVLSALIACLEALVIGLTPDDKWDARHNAGSGKHSESHWILAVILVLTVGLGAMG 121
              + F LS     +EAL IGLTPD+KWDA+HNA S + S+S W + +++VLT   G   
Sbjct: 67  SVLVLFPLSIFAGWIEALTIGLTPDEKWDAKHNALSAQQSDSRWSVVILIVLTFACGFTT 126

Query: 122 VIALLARSFDLLFTGGAFG 140
           ++  +AR  DLL TGGA+G
Sbjct: 127 IVIAMARMTDLLLTGGAYG 145


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.326    0.142    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 381,156
Number of extensions: 16505
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 66
Effective length of database: 947,443
Effective search space: 62531238
Effective search space used: 62531238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)