BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1344.p (588 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin... 958 0.0 gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidored... 459 e-130 gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthin... 92 6e-20 >gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 596 Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/590 (78%), Positives = 512/590 (86%), Gaps = 2/590 (0%) Query: 1 VKDMLFVMNELAGLAAVNALPGCEDATPETAEAILEEKAKFCSEVIAPLNHSADKEPSSW 60 +KDMLFVMNELA LAA+NALPGCEDATPET EA+LEE A+FC EVIAPLN + D+ PS W Sbjct: 7 LKDMLFVMNELADLAAINALPGCEDATPETVEAVLEENARFCGEVIAPLNQAGDRHPSEW 66 Query: 61 ADGKVTTSPGFKQAFRQFGEAGWQGVQHPVEFGGQGLPKLLATPCIEMLNSANLSFALCP 120 DGKVTT+PGFK+AF+ + AGWQGVQHPV+FGGQGLPKL+ATPC+EMLNSA+LSFALCP Sbjct: 67 KDGKVTTTPGFKEAFKAYAAAGWQGVQHPVDFGGQGLPKLVATPCMEMLNSASLSFALCP 126 Query: 121 LLTDGTIEALMTAGSQAQKETFIANFISGKWTGTMNLTEPQAGSDLALVRTRAVPEGDGT 180 LLTDG IEALMTAGS QKE F+ NFI+GKWTGTMNLTEPQAGSDLALVR+RAVP+GDGT Sbjct: 127 LLTDGAIEALMTAGSDQQKEKFLPNFIAGKWTGTMNLTEPQAGSDLALVRSRAVPQGDGT 186 Query: 181 YKIFGTKIFITYGEHDMAENIVHLVLARTPNAPEGVKGISLFIVPKFLINADGSLGARND 240 YKI GTKIFITYGEHDMAENI+HLVLARTP+APEGVKGISLF+VPKFL+N DGSLG RND Sbjct: 187 YKISGTKIFITYGEHDMAENIIHLVLARTPDAPEGVKGISLFLVPKFLVNEDGSLGERND 246 Query: 241 VHCVSIEHKLGIKASPTAVLQFGDHGGAIGTLVGEENRGLEYMFIMMNAARFAVGIQGLS 300 CVSIEHKLGIKASPTAVLQFGDHGGAIGTL+G+ENRGLE MFIMMNAARFAVGIQG+S Sbjct: 247 AFCVSIEHKLGIKASPTAVLQFGDHGGAIGTLIGQENRGLETMFIMMNAARFAVGIQGIS 306 Query: 301 VSERSYQKAVAYARDRIQSRDLAGSPGPVAIIHQPDVRRMLMSMRAQIEAARALAYVAAA 360 V+ER+YQKAVAYA+DR+QS+DL GS V+IIHQPDVRRMLMSMRAQIEAARALAYV A+ Sbjct: 307 VAERAYQKAVAYAKDRVQSKDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGAS 366 Query: 361 TSDAAHFSNDEATRKSNQAFYEFLVPIVKGWITEMSVDVTSTGVQVHGGMGFIEETGAAQ 420 D AH DE R + QAFYEFLVPI+KGW TEMS+DV STG+Q+HGGMGFIEETGAAQ Sbjct: 367 AFDIAHHHGDEKVRDAQQAFYEFLVPIIKGWSTEMSIDVASTGLQIHGGMGFIEETGAAQ 426 Query: 421 YYRDARILPIYEGTTAIQANDLVGRKTARDGGAVAKGILAQVRQTVSELQGDA--QLQPI 478 YYRDARIL IYEGTTAIQANDLVGRKT RDGGAVA+GI+A VR T SEL A L+ I Sbjct: 427 YYRDARILTIYEGTTAIQANDLVGRKTVRDGGAVARGIIAAVRATESELARAATPDLKAI 486 Query: 479 AARLAEAADALEQVVEYVVGNLKSDIKAVFAGSVPYLKMAGVVLGGWQMARAAAIAAAKL 538 A LA A+ AL++VV YVV N++SDIK VFAGSVPYLK+AG+VL GWQM RAA IA AKL Sbjct: 487 GAHLAAASTALDEVVAYVVANIQSDIKGVFAGSVPYLKLAGIVLCGWQMGRAALIAQAKL 546 Query: 539 KAGEGDDKFYAAKLATARFYADQILPQALAHRTAIVEGGQAVLALAEDQF 588 AG GD KFY AK+ATARF+AD L QA A+R+AI G VLAL E QF Sbjct: 547 DAGSGDAKFYQAKIATARFFADYFLSQAGAYRSAITGGSAGVLALDESQF 596 >gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 596 Score = 459 bits (1180), Expect = e-130, Method: Compositional matrix adjust. Identities = 259/597 (43%), Positives = 356/597 (59%), Gaps = 17/597 (2%) Query: 1 VKDMLFVMNELAGLA-AVNALPGCEDATPETAEAILEEKAKFCSEVIAPLNHSADKEPSS 59 ++DM FV++EL +A + LP D + +LEE KF SEV+ PLNHS D+E Sbjct: 8 LRDMQFVLHELLHVADELKVLPKHADIDADIINQVLEEGGKFTSEVLFPLNHSGDREGCK 67 Query: 60 W--ADGKVTTSPGFKQAFRQFGEAGWQGVQHPVEFGGQGLPKLLATPCIEMLNSANLSFA 117 + +VT GFK A+ Q+ AGW + E+GGQGLP +L EMLNS+N ++ Sbjct: 68 LDTSTHEVTPPKGFKAAYEQYVAAGWPSLTCDPEYGGQGLPMVLQNSFYEMLNSSNQAWT 127 Query: 118 LCPLLTDGTIEALMTAGSQAQKETFIANFISGKWTGTMNLTEPQAGSDLALVRTRAVPEG 177 + P L+ G E L G++ QK ++ +SG+WTGTM LTE Q G+DL L+R++A P+ Sbjct: 128 MYPGLSHGAYECLYAHGTEQQKALYLPKLVSGEWTGTMCLTEAQCGTDLGLLRSKAEPQA 187 Query: 178 DGTYKIFGTKIFITYGEHDMAENIVHLVLARTPNAPEGVKGISLFIVPKFLINADGSLGA 237 DG+YKI G+KIFI+ GEHDMA NI+HLVLAR P+APEG KGISLFIVPKFL +A G LGA Sbjct: 188 DGSYKITGSKIFISAGEHDMAANILHLVLARLPDAPEGTKGISLFIVPKFLPDAAGKLGA 247 Query: 238 RNDVHCVSIEHKLGIKASPTAVLQFGDHGGAIGTLVGEENRGLEYMFIMMNAARFAVGIQ 297 RN + C ++E K+GI + T + GA G L+GE N+GL MF+MMNAAR VG+Q Sbjct: 248 RNPIFCGALEEKMGIHGNATCQMNI---DGATGWLIGEPNKGLNAMFVMMNAARLGVGMQ 304 Query: 298 GLSVSERSYQKAVAYARDRIQSRDLAG-----SPGPVAIIHQPDVRRMLMSMRAQIEAAR 352 L ++E +YQ A+ YA+DR+Q R L G P I+H PDVRRML++ +A E R Sbjct: 305 SLGLTEVAYQNALVYAKDRLQMRSLTGPKATDKPADPIIVH-PDVRRMLLTAKAYAEGGR 363 Query: 353 ALAYVAAATSDAAHFSNDEATRKSNQAFYEFLVPIVKGWITEMSVDVTSTGVQVHGGMGF 412 A + A D DEA R L PI+K ++T+ TS +QV+GG GF Sbjct: 364 AFSSYVALQIDKELNHPDEAVRAEAVDEVALLTPIIKAFLTDNGWISTSEAMQVYGGHGF 423 Query: 413 IEETGAAQYYRDARILPIYEGTTAIQANDLVGRKTARDGGAVAKGILAQVRQTVSELQGD 472 I E G QY RD+RI IYEGT IQ+ DL+GRK D GA + A+++ + E D Sbjct: 424 ISEWGMEQYVRDSRINMIYEGTNTIQSLDLLGRKILLDNGAKLRKFGAKIQAFIEENGTD 483 Query: 473 AQLQPIAARLAEAADALEQVVEYVVGNLKSDIKAVFAGSVPYLKMAGVVLGGWQMARAAA 532 + LA+ AD + ++ + + V A +VPYL++AG ++ + A+ A Sbjct: 484 EAMSEFITPLADLADKVTKLTMEIGMKAFQNPDEVGAAAVPYLRVAGHLVYAYFFAQMAK 543 Query: 533 IAAAKLKAGEGD-DKFYAAKLATARFYADQILPQALAHRTAIVEGGQAVLALAEDQF 588 IA AK +GD D FY +KLATARFY ++LP+ G +++AL + F Sbjct: 544 IALAK----QGDSDPFYKSKLATARFYFARLLPETAMLIRQARSGSASLMALDAELF 596 >gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 93/334 (27%), Positives = 155/334 (46%), Gaps = 48/334 (14%) Query: 155 MNLTEPQAGSDLALVRTRAVP---EGDGT-YKIFGTKIFITYGEHDMAENIVHLVLARTP 210 M +TE Q GSD+ T A P G G Y + G K F + D HLVLART Sbjct: 180 MGMTEKQGGSDVRSNTTVARPLESAGRGQPYALTGHKWFFSAPMCD-----AHLVLARTE 234 Query: 211 NAPEGVKGISLFIVPKFLINADGSLGARNDVHCVSIEHKLGIKASPTAVLQFGDHGGAIG 270 G+S F VP++ DGS +N + ++ KLG +++ ++ ++F D A G Sbjct: 235 ------AGLSCFFVPRW--RPDGS---KNAILIQRLKDKLGNRSNSSSEVEFQD---AYG 280 Query: 271 TLVGEENRGLEYMFIMMNAARFAVGIQGLSVSERSYQKAVAYARDRIQSRDLAGSPGPVA 330 +VGE+ RG+ + M N R I + + +A+ +AR R G P Sbjct: 281 VMVGEDGRGIPTIIEMANHTRLDCVIGSTGLMRNALVQAIHHAR----HRHAFGLP---- 332 Query: 331 IIHQPDVRRMLMSMRAQIEAARALAYVAAATSDAAHFSNDEATRKSNQAFYEFLVPIVKG 390 + Q ++ +L + + EAA L A ++A +D R A+ + P K Sbjct: 333 LAEQALMQNVLADLALESEAATRLMLRLAQAAEAI---DDPVER----AWRRVVTPAAKF 385 Query: 391 WITEMSVDVTSTGVQVHGGMGFIEETGAAQYYRDARILPIYEGTTAIQANDLVGRKTARD 450 WI + +++ T ++V GG G++E A+ YR+A + I+EG+ + D++ R A++ Sbjct: 386 WICKRALEFTGECMEVWGGNGYVENAPMARMYREAPVNSIWEGSGNVMCLDVL-RAIAKE 444 Query: 451 GGAVAKGILAQ---------VRQTVSELQGDAQL 475 A + A +R+ ++EL+ D L Sbjct: 445 ADAFKLLLDALLDIAKEDKGLRELIAELRTDLAL 478 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,333,205 Number of extensions: 55312 Number of successful extensions: 146 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 3 Length of query: 588 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 500 Effective length of database: 895,685 Effective search space: 447842500 Effective search space used: 447842500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)