BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1342.p
         (251 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979969|ref|YP_001352275.1| electron transfer flavoprotein ...   405   e-114

>gi|152979969|ref|YP_001352275.1| electron transfer flavoprotein
           beta subunit [Janthinobacterium sp. Marseille]
          Length = 249

 Score =  405 bits (1040), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/251 (82%), Positives = 224/251 (89%), Gaps = 2/251 (0%)

Query: 1   MKVLVPVKRVVDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIA 60
           MKVLVPVKRVVD+NVKVRVKSD SGVDIANVKMSMNPFDEIAVEEA RLKE GKVTE+IA
Sbjct: 1   MKVLVPVKRVVDFNVKVRVKSDQSGVDIANVKMSMNPFDEIAVEEATRLKEAGKVTEIIA 60

Query: 61  VSAGVTQCQETLRTAMAIGADRGILAEVGADVELQPLAVAKILKALAEKEQPQLIILGKQ 120
           VS G+ Q QETLRTAMAIGADR +L E   DVELQPLAVAK+LKA+A+KEQPQLIILGKQ
Sbjct: 61  VSCGILQSQETLRTAMAIGADRAVLVE--TDVELQPLAVAKLLKAVADKEQPQLIILGKQ 118

Query: 121 AIDDDCNQTGQMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDL 180
           AIDDD NQTGQMLAALL WPQAT+ASKV ++  KV VTREVDGGLE ++LTLPAI+TTDL
Sbjct: 119 AIDDDANQTGQMLAALLDWPQATYASKVEIDGDKVKVTREVDGGLEVVSLTLPAIVTTDL 178

Query: 181 RLNEPRYVTLPNIMKAKKKQLDTVKPDELGVDVAPRVKTLKVAEPAKRSAGVKVPDVATL 240
           RLNEPRYVTLPNIMKAKKK L+  KP +LGVDV PR+KTLKV EPAKRSAG+ VPDV TL
Sbjct: 179 RLNEPRYVTLPNIMKAKKKTLENFKPADLGVDVTPRLKTLKVVEPAKRSAGIIVPDVKTL 238

Query: 241 VAKLKNEAKVI 251
           V KL+NEAKVI
Sbjct: 239 VEKLRNEAKVI 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 497,420
Number of extensions: 18744
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 170
Effective length of database: 921,564
Effective search space: 156665880
Effective search space used: 156665880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)