BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1341.p (319 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Ja... 245 3e-66 gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthi... 159 2e-40 gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid... 120 1e-28 gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthino... 100 2e-22 >gi|152980390|ref|YP_001352411.1| 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 327 Score = 245 bits (626), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 138/320 (43%), Positives = 199/320 (62%), Gaps = 5/320 (1%) Query: 1 MKQRVVVYKKLPEHLVQRLQAQFELTLFDRITEDNRADFLAALKMADGMIGT-SLPITNA 59 MK +V+V + +++RLQ QFE+ + A+ L ++ D ++ T S ++ Sbjct: 1 MKAKVLVARATFPDVIERLQQQFEVESNQEDKIFSPAELLQKMQGKDAVVVTASEKMSAD 60 Query: 60 MLDGAPRLKIASTISVGVDNFDLDYFRQRGLMLAHTPGVLTEATADTIFALILATARRVV 119 ++ P+LK ++VG +N D+ G+M+ +TP VL E TAD + L++A ARRV Sbjct: 61 VIAANPQLKAICNVAVGYNNIDVAAATAAGVMVTNTPDVLNETTADYAWTLLMANARRVC 120 Query: 120 ELADYVKAGRWKGSIGEAQFGVNVHGKTLGLIGMGRIGSAVARRARHGFGMSILYHN-TR 178 E +++AG WK ++ G ++HG TLG++GMGRIG A+ARR+ GF M+++YHN +R Sbjct: 121 ESEHWLRAGNWKHWRFDSFLGADIHGATLGILGMGRIGQAIARRST-GFDMNVIYHNRSR 179 Query: 179 PNPEAEAEL-GARYVSRDALLSQADFVCLMLPLTPATERMFGAREFGLMKRSAIFINASR 237 PE EA ARYVS++ LL AD + L+LP +P T + GA E LMK +A +N +R Sbjct: 180 ATPEQEAYANNARYVSKEELLRSADHLILVLPYSPQTHHIIGAAELALMKPTATLVNIAR 239 Query: 238 GRIVDETALIAALQENTIYGAGLDVFEVEPLPVSSPLLRLPNVVALPHIGSATHETRLAM 297 G IVD+ ALIAAL+EN I AGLDVFE EP + L L NVV PHIGS + +TR AM Sbjct: 240 GGIVDDVALIAALRENRIASAGLDVFENEP-ALHPDFLTLSNVVLTPHIGSGSEKTRRAM 298 Query: 298 AELAVANLIAGLRGEPVPHL 317 A+ A ANL A + G+ P+L Sbjct: 299 ADCASANLAAAMSGQQPPNL 318 >gi|152982997|ref|YP_001354733.1| glycerate dehydrogenase [Janthinobacterium sp. Marseille] Length = 336 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 170/323 (52%), Gaps = 14/323 (4%) Query: 1 MKQRVVVYKKLPEHLVQRLQAQFELTLFDRITEDNRADFLAALKMADGMIGTSLP--ITN 58 MK ++V+ + +V+ L + E+ D + R + L K AD ++ +P + + Sbjct: 1 MKPKIVITHWVHPEIVEMLSSVAEVVTNDTLETLPREELLRRSKDADAVMAF-MPDSVDD 59 Query: 59 AMLDGAPRLKIASTISVGVDNFDLDYFRQRGLMLAHTPGVLTEATADTIFALILATARRV 118 + L P+LKI G DNFD+D +RG+ P +LT TA+ L+L R V Sbjct: 60 SFLAACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHV 119 Query: 119 VELADYVKAGRWKGSIGEAQFGVNVHGKTLGLIGMGRIGSAVARRARHGFGMSILYHNTR 178 + D+V++G + G + +G + G T+G+IGMGR+G A+A+R GF M+ +Y ++ Sbjct: 120 MAGDDHVRSGTFHGWRPKL-YGAGLAGSTIGIIGMGRVGKAIAKRLS-GFEMNAVYCDSV 177 Query: 179 P-NPEAEAELGARYVSRDALLSQADFVCLMLPLTPATERMFGAREFGLMKRSAIFINASR 237 P NP E AR VS D LL+ +DFV MLP+T T + A M+R + +N SR Sbjct: 178 PLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSR 237 Query: 238 GRIVDETALIAALQENTIYGAGLDVFEVEPL-----PVSSPLLRLPN---VVALPHIGSA 289 G +VDE A++ AL + + G DVFE+E P++ P L N + PH+GS Sbjct: 238 GSVVDENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHVGSG 297 Query: 290 THETRLAMAELAVANLIAGLRGE 312 + RL + + +++ L G+ Sbjct: 298 VKKVRLEIERYSAHSILQALAGQ 320 >gi|152982822|ref|YP_001355375.1| D-isomer specific 2-hydroxyacid dehydrogenase [Janthinobacterium sp. Marseille] Length = 323 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/262 (33%), Positives = 132/262 (50%), Gaps = 6/262 (2%) Query: 56 ITNAMLDGAPRLKIASTISVGVDNFDLDYFRQRGLMLAHTPGVLTEATADTIFALILATA 115 ++ +L+ P LK+ + + DL RG+ + G T A A+ + LI+A Sbjct: 59 LSRQLLEKLPNLKLIAQTGKVSGHIDLPAAAARGITIVEGVGDPT-APAELTWTLIMAAM 117 Query: 116 RRVVELADYVKAGRWK-GSIGEAQ--FGVNVHGKTLGLIGMGRIGSAVARRARHGFGMSI 172 R++ + + +K G W+ S+ A+ G + G+TL + G GRIG +A + FGM + Sbjct: 118 RKLPQYVNNLKDGLWQIASMSPARNTLGTALKGRTLAIWGYGRIGQMIAAYGK-AFGMDV 176 Query: 173 LYHNTRPNPEAEAELGARYVS-RDALLSQADFVCLMLPLTPATERMFGAREFGLMKRSAI 231 + + EA G R S + A S+AD + L L L AT + A + MK A+ Sbjct: 177 MVWGRPASCEAAVRDGYRAASSQQAFFSEADVLTLHLRLNDATRGIVTADDLARMKPQAL 236 Query: 232 FINASRGRIVDETALIAALQENTIYGAGLDVFEVEPLPVSSPLLRLPNVVALPHIGSATH 291 F+N SR +V AL AAL++ A LDVFE EPLP SPLLR+ NV+A PH+G Sbjct: 237 FVNTSRAELVATDALQAALEQGRPGYAALDVFENEPLPPGSPLLRMENVLASPHLGYVEK 296 Query: 292 ETRLAMAELAVANLIAGLRGEP 313 ++ A N++ G P Sbjct: 297 DSYELYFGSAFQNIVDFANGTP 318 >gi|152982514|ref|YP_001355351.1| formate dehydrogenase [Janthinobacterium sp. Marseille] Length = 400 Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 125/270 (46%), Gaps = 13/270 (4%) Query: 37 ADFLAALKMADGMIGTSLPITNAMLDG-----APRLKIASTISVGVDNFDLDYFRQRGLM 91 AD + ++ D I S P A + A +LK+ T +G D+ DL+ + + Sbjct: 80 ADSVLDKELHDAEIIISQPFWPAYMTAERIAKAKKLKMIVTAGIGSDHTDLEAANKHNIT 139 Query: 92 LAHTPGVLTEATADTIFALILATARRVVELADYVKAGRWKGSIGEA-QFGVNVHGKTLGL 150 +A + + A+ + +IL+ R + + V G W +I + + ++ ++G Sbjct: 140 VAEVTYCNSHSVAEHVVMMILSQVRNYIPSYNQVINGGW--NIADCVERSYDLEAMSVGT 197 Query: 151 IGMGRIGSAVARRARHGFGMSILYHNTRPNPEA-EAELGARYVSR-DALLSQADFVCLML 208 + GRIG V R + F + + Y + PEA E EL Y S D+L D V L Sbjct: 198 VAAGRIGLRVLRLLK-PFDVKLHYMDRHRLPEAVEKELNLTYHSTLDSLTKVCDVVTLNC 256 Query: 209 PLTPATERMFGAREFGLMKRSAIFINASRGRIVDETALIAALQENTIYGAGLDVFEVEPL 268 PL P TE M + KR + IN +RG++ D A++AAL+ + G DV+ +P Sbjct: 257 PLHPETEHMINEKTLKNFKRGSYIINTARGKLCDRDAIVAALKSGQLAGYAGDVWFPQPA 316 Query: 269 PVSSPLLRLPNVVALPHIG--SATHETRLA 296 P P +P+ PHI S T +TR A Sbjct: 317 PKDHPWRTMPHHGMTPHISGTSLTAQTRYA 346 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 686,887 Number of extensions: 26660 Number of successful extensions: 86 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 4 Length of query: 319 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 236 Effective length of database: 914,170 Effective search space: 215744120 Effective search space used: 215744120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)