BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1338.p (244 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 309 1e-85 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 224 3e-60 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 166 1e-42 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 147 7e-37 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 144 4e-36 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 309 bits (792), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 149/239 (62%), Positives = 184/239 (76%) Query: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSI 60 MP++ I+N+ K +GSNQVL GI + VE G+V+A+IG+SGSGKST+LRCINGLE+ID GSI Sbjct: 1 MPLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSI 60 Query: 61 TVAGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAI 120 +VAG L L LR VGM+FQ +NLFPHL+V NIM+SP IVK + + ARA A+ Sbjct: 61 SVAGSHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARALAM 120 Query: 121 KVLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKV 180 K L++VGL K D++P+QLSGGQQQRVAIAR+L+MEPQ +L DEVTSALDPEL EVL V Sbjct: 121 KNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVLNV 180 Query: 181 MEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFIG 239 + LA GMT+++VTHEM FAR V D VFMHQGKV E E+ FA+P TPE KQF+G Sbjct: 181 VRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQFLG 239 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 224 bits (571), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 112/236 (47%), Positives = 159/236 (67%) Query: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITV 62 ++E++ ++K +G+ QVL + V +G VV V G SGSGKST+++ +NGLE G ITV Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 63 AGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAIKV 122 G + + +L LR +GMVFQ++ LFPHL++ EN+ L+ V K + A +K Sbjct: 61 DGISVGDPKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATERGLKY 120 Query: 123 LQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 L +VGL +D +P QLSGGQQQRVAIAR+L+M+P MLFDE TSALDPE+ EVL VM Sbjct: 121 LDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFI 238 LA+ GMTM++VTHEM FA++VA+ +FM +G + E +EFF ++ A+ F+ Sbjct: 181 GLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDFL 236 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 166 bits (421), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 142/241 (58%), Gaps = 10/241 (4%) Query: 4 VEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSITVA 63 +E+ NI K+FG+ LN +SL G++ A++G SG GK+T+LR I GLE D G + + Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETA----RATA 119 G + +H + VG VFQHY LF H+TV ENI R V+ AT + + Sbjct: 63 GEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLR-VRPAATRPSESQIKEKV 117 Query: 120 IKVLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLK 179 K+L+ V LD D YP QLSGGQ+QR+A+AR+LA+EP+V+L DE ALD ++ E+ + Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 180 VMEELARG-GMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQFI 238 + L +T + VTH+ E A VAD V M++G V + ++ + +P +P F+ Sbjct: 178 WLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFL 237 Query: 239 G 239 G Sbjct: 238 G 238 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 147 bits (371), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 91/252 (36%), Positives = 143/252 (56%), Gaps = 28/252 (11%) Query: 4 VEINNITKRFGSN--QVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSIT 61 +E + + GS+ ++++ +S +++RG++ ++G+SG GK+T+LR I G E++ G IT Sbjct: 13 LETIRVGYQLGSHMHEIVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRIT 72 Query: 62 VAGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAIK 121 + G +L+N + + VG+VFQ Y LFPHL+V +NI ++K A K Sbjct: 73 LGGKELSNAQHTTVPEARHVGVVFQDYALFPHLSVSDNIGFG---LRKLAAAERNGRINK 129 Query: 122 VLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPE----LTAEV 177 +L VGL + +P +LSGGQQQRVA+AR+LA +P ++L DE S LD + L +EV Sbjct: 130 LLALVGLQAQEKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEV 189 Query: 178 LKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKV--WEA------RPSEEFFADP 229 +++E+ G T +LVTH+ A +AD M G + W+ RP+ F AD Sbjct: 190 RDILKEV---GTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVAD- 245 Query: 230 QTPEAKQFIGAG 241 FIG G Sbjct: 246 -------FIGLG 250 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 144 bits (364), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/247 (35%), Positives = 138/247 (55%), Gaps = 12/247 (4%) Query: 1 MPIVEINNITKRFGSNQVLNGISLSVERGQVVAVIGRSGSGKSTMLRCINGLETIDGGSI 60 M ++EI N+T+RFG N V++ ISLS+E G+ ++G SG GK+T+LR I G + D G I Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 61 TVAGHKLTNKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARATAI 120 + G LT ++ V VFQ+Y LFPH+TV NI P + T + Sbjct: 61 LLDGVDLTGVPPE----QRPVRTVFQNYALFPHMTVGGNIAF-PLEMANTPKAEIQKKVD 115 Query: 121 KVLQQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPEL----TAE 176 + L+ V L YP +LSGGQ+QRV+IAR+L P+++L DE SALD +L E Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 177 VLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEAKQ 236 ++ + +E+ G+T + VTH+ A ++ M++G+V + ++ P++ Sbjct: 176 LINLQKEV---GITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVAD 232 Query: 237 FIGAGSI 243 FIG ++ Sbjct: 233 FIGTCNL 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 525,931 Number of extensions: 19468 Number of successful extensions: 307 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 196 Number of HSP's successfully gapped: 65 Length of query: 244 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 163 Effective length of database: 921,564 Effective search space: 150214932 Effective search space used: 150214932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)