BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1337.p (216 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 223 7e-60 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 92 2e-20 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 83 2e-17 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 64 5e-12 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 223 bits (568), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 109/208 (52%), Positives = 156/208 (75%) Query: 7 WDNFLFLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVL 66 WD LL A RWT++LS + F+ GG+ G ++ RTS LR ++ +YI+I QGTP+L Sbjct: 7 WDILRNLLLAGRWTVVLSLVTFLLGGMLGLLILFFRTSKSGALRNVARIYIEIFQGTPLL 66 Query: 67 ILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTALAMT 126 + LFL F+G+A+FG ++P +AA + +T++S+++L EIWRGC+EA+P QWEAS+ LAM Sbjct: 67 MQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRGQWEASSVLAMN 126 Query: 127 RWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATFQPFLV 186 QQ+RYVILPQA+RI+LPPT+GF VQI+K T++ SIIG VEL++A +++NATF PF V Sbjct: 127 YVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATVITNATFMPFTV 186 Query: 187 FPIVAAIYFVFCYPLSRFAFVLERKYHA 214 + YF+ C+PLSR++ LERK+HA Sbjct: 187 YAAAGLFYFILCWPLSRYSQFLERKFHA 214 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 11/210 (5%) Query: 13 LLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFLS 72 LL WTL ++ A+I + G IV + RTS L L Y+++ + P+L+ F+ Sbjct: 21 LLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFFVW 80 Query: 73 FY---GL--AIFGY--KLPP----MVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAST 121 ++ GL A+ + L P V A + + ++S+ + E R I+A+P Q A Sbjct: 81 YFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNAGY 140 Query: 122 ALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATF 181 AL +T Q RYV+LP A RI +PP L+ ++KNT++A IGLVEL + + TF Sbjct: 141 ALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMTF 200 Query: 182 QPFLVFPIVAAIYFVFCYPLSRFAFVLERK 211 + F F IY V +R ++ER+ Sbjct: 201 RYFEAFGAATLIYVVIAMTANRLMALVERR 230 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 111/214 (51%), Gaps = 9/214 (4%) Query: 12 FLLEAARWTLLLSALAFIGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLILLFL 71 +LL ++TL L+ +A GG I G ++A+ R S L L++A Y+ +++ P+L+++F Sbjct: 15 YLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRSIPLLLVIFW 74 Query: 72 SFYGL-----AIFGYKLPPMVAAT----IAMTIYSSAYLGEIWRGCIEAVPVPQWEASTA 122 ++ + I G + P + A I ++ +AY EI R I+++ Q A A Sbjct: 75 FYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAGYA 134 Query: 123 LAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATFQ 182 L +T Q ++ V+LPQA R LP + + + ++ S+ S++ + + A V+ + Sbjct: 135 LGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGAAVKVAQRDSR 194 Query: 183 PFLVFPIVAAIYFVFCYPLSRFAFVLERKYHAHR 216 ++ VA +YFV + LS L++++ R Sbjct: 195 VVEMYLFVAIVYFVLSFALSTLVKQLQKRFAIIR 228 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 64.3 bits (155), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 80/148 (54%) Query: 42 RTSHLAPLRLLSAVYIQIIQGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYL 101 RT LR + + Y+++I+ TP LI LF F+GL G ++ M AA +AM I AY Sbjct: 46 RTQEPRWLRPVVSAYVELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYS 105 Query: 102 GEIWRGCIEAVPVPQWEASTALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIA 161 EI R + AV Q EA+ +L+MTR Q R++IL A++ P +V ++ +++ Sbjct: 106 TEIIRAGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVC 165 Query: 162 SIIGLVELAQAGKLVSNATFQPFLVFPI 189 S I + EL+ A + F+ F + I Sbjct: 166 SQIAVEELSFAANFIQGRNFRAFEAYLI 193 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.331 0.142 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 422,678 Number of extensions: 14681 Number of successful extensions: 81 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 4 Length of query: 216 Length of database: 1,221,021 Length adjustment: 79 Effective length of query: 137 Effective length of database: 928,958 Effective search space: 127267246 Effective search space used: 127267246 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 127 (53.5 bits)