BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1336.p (231 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 168 3e-43 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 79 2e-16 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 77 9e-16 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 69 3e-13 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 168 bits (425), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/213 (51%), Positives = 150/213 (70%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAVTSY 60 M Y F+F F + L+ G L T+ L A+ + G+AVGIFGA R R V++Y Sbjct: 1 MAYQFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQEPRWLRPVVSAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VELIR+TPFL+QLF IFFGLPSIGVQ+ AA++AM +NLGAYSTEI+RAG++A+ Q Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAA +L+MTR Q+ RH++L PAL+K++PAL+SQ ++ML S++ S I+ EEL+ AN + Sbjct: 121 IEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIG 213 FR+FE YL+ +Y+LLA+L R LIG Sbjct: 181 QGRNFRAFEAYLIATAIYLLLAILLRQILRLIG 213 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 9/208 (4%) Query: 4 DFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAVTSYVEL 63 D F I + LL G T++L+ ++ G+ G A+ + ++ L +YV L Sbjct: 3 DLDFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNL 62 Query: 64 IRSTPFLVQLFIIFFGLPSI---------GVQVDANIAALVAMTVNLGAYSTEIVRAGMM 114 +RS P L+ +F +F +P + VQ+ A+ +A + + AY EI+RAG+ Sbjct: 63 MRSIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQ 122 Query: 115 AIHPSQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELT 174 +I Q+ A AL +T Q ++ VVL A + P L +Q ++ S+VS ++ + Sbjct: 123 SISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFV 182 Query: 175 ATANLLDAETFRSFEIYLVVMVLYILLA 202 A + R E+YL V ++Y +L+ Sbjct: 183 GAAVKVAQRDSRVVEMYLFVAIVYFVLS 210 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 77.0 bits (188), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 77/143 (53%) Query: 60 YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPS 119 Y+E+ + TP L+QLF++FFG+ G++V A +AA + +T+ ++ EI R + AI Sbjct: 56 YIEIFQGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRG 115 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 Q EA+ LAM Q +R+V+L AL P ++ +++ S I EL+ A + Sbjct: 116 QWEASSVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATV 175 Query: 180 LDAETFRSFEIYLVVMVLYILLA 202 + TF F +Y + Y +L Sbjct: 176 ITNATFMPFTVYAAAGLFYFILC 198 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 68.6 bits (166), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 17/204 (8%) Query: 14 LDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAV---TSYVELIRSTPFL 70 L+ LL G T+ ++ + I VG +I+ + + R V +YVEL R+ P L Sbjct: 18 LESLLSGLGWTLAVALFAWIFAFVVG---SIVGVGRTSEKRWLVRLGGAYVELFRNIPLL 74 Query: 71 VQLFIIFFGLPSIGVQVDANIAAL-------VAMTVNLGAYST----EIVRAGMMAIHPS 119 VQ F+ +F +P + V A + L V V LG +++ E VR+G+ A+ Sbjct: 75 VQFFVWYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRG 134 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 Q A AL +T Q R+V+L A + P L S+ ++ +++ +I EL Sbjct: 135 QRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTRE 194 Query: 180 LDAETFRSFEIYLVVMVLYILLAL 203 + TFR FE + ++Y+++A+ Sbjct: 195 MGEMTFRYFEAFGAATLIYVVIAM 218 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.333 0.141 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 363,326 Number of extensions: 12311 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 112 Number of HSP's successfully gapped: 4 Length of query: 231 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 151 Effective length of database: 925,261 Effective search space: 139714411 Effective search space used: 139714411 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 128 (53.9 bits)