BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1335.p
         (268 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...   155   2e-39
gi|152981667|ref|YP_001351969.1| solute-binding periplasmic prot...    55   6e-09

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  155 bits (393), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 130/236 (55%), Gaps = 1/236 (0%)

Query: 29  ASAQSIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVDVANLIGKYLGLPVEIVPLV 88
           A A ++ ++ KKG + + V    PPFGSV     P G D+DVA LI K LG+ VE++P+ 
Sbjct: 21  ARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVATLIAKKLGVKVELIPVT 80

Query: 89  PPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVGPVGSHYKKLDDLVKK 148
              RIP L++ KVD++ +++   PER K + F+  Y+ F   + GP         DL  K
Sbjct: 81  SANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFGPADQKVAAPADLAGK 140

Query: 149 KVGVSRGSTNDTALTRLAPAGTVLVRFEDDSTVTQALLSNQVDAISIPNTMANEIVKSRG 208
            +GV+RGS  D  L+++AP    + R+ED++    + LSNQV  ++  N +A  I+    
Sbjct: 141 TIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLVATGNVIAAAIIAKNP 200

Query: 209 QGKIEVKFPYSVQPNSMTVRKGSYELQQWLNNFIYYVKLNGELDAISRKWAG-PLP 263
             K E KF     P S+ + KG  +L + +N  I   K +G L+ ++ KW G PLP
Sbjct: 201 PKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSLNTLTEKWLGLPLP 256


>gi|152981667|ref|YP_001351969.1| solute-binding periplasmic protein
           of glutamate/aspartate ABC transporter
           [Janthinobacterium sp. Marseille]
          Length = 300

 Score = 54.7 bits (130), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 23  VATAASASAQSIAELTKKGKITIGVVSGTPPFGSVDAKGVPIGYDVD----VANLIGKYL 78
           V   A     ++ ++     ITIG    + PF  +D K  PIGY VD    + + +   L
Sbjct: 21  VTVQAQDLGGTLKKIKDTNSITIGYRESSIPFSFLDDKQQPIGYAVDLCMKIVDTVKADL 80

Query: 79  GLP---VEIVPLVPPARIPALESGKVDMLAATLAPTPERAKSVLFTIPYSGFELSIVGPV 135
            LP   V + P+    RIP L +G +D+   +   +  R + V F   Y    ++     
Sbjct: 81  KLPNLKVVMQPVTSSNRIPLLRNGTIDLECGSTTNSKVRQEQVSFGPNYFVINVTAAVKK 140

Query: 136 GSHYKKLDDLVKKKVGVSRGSTNDTALTRLAPAGTVLVRF---EDDSTVTQALLSNQVDA 192
            S+   LDDL  K +  + G+T+   L        + V+    +D +     +  ++  A
Sbjct: 141 TSNINSLDDLNGKTISTTSGTTSVPLLKGYKKTENIQVKEIYGKDHAEAFLLMADDRAVA 200

Query: 193 ISIPNT-MANEIVKSRGQGKIEVKFPYSV--QPNSMTVRKGSYELQQWLNNFIYYVKLNG 249
             + N  +A +I  S+  G  ++  P S+  +P SM +RK   + +  ++  I  V  +G
Sbjct: 201 FVMDNILLAGQIANSKRPGDYKI-LPESLSQEPYSMMLRKDDPQFKALVDKSIGAVMKSG 259

Query: 250 ELDAISRKW-AGPLP 263
           E++ I  KW   P+P
Sbjct: 260 EINKIYAKWFTTPIP 274


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 550,626
Number of extensions: 21727
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 186
Effective length of database: 917,867
Effective search space: 170723262
Effective search space used: 170723262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)