BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1329.p (265 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 214 4e-57 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 196 1e-51 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 171 5e-44 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 170 8e-44 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 162 1e-41 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 214 bits (545), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 121/256 (47%), Positives = 159/256 (62%), Gaps = 11/256 (4%) Query: 6 SVSIKRVG--LSIGKHEIMA--GIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEVS-G 60 ++ IK V SIG + A ++L I GEF+CL+G SGCGKSTLL +AGF+ S G Sbjct: 13 AIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSG 72 Query: 61 EISIGGQRIKGPGLDRGVVFQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSL 120 ++ G I GP +RG+VFQ LFPWLTV+EN+ +G R R + A+ + Y + Sbjct: 73 SANMYGMPIDGPSPERGMVFQDY-GLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDM 131 Query: 121 VGLRHAIDKFPGELSGGMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIW 180 VGL + +PG+LSGGM+QR IARVL N V+LMDEPFGALDA TRE LQ +L IW Sbjct: 132 VGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEIW 191 Query: 181 KSTGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIETVDLPHPRDPADPACMALYAR 240 + T T+VFVTH + EA++L+DRVV MTAGP I+ +DL PRD + Sbjct: 192 ERTKVTVVFVTHAVEEAVMLSDRVVVMTAGP-GRIEEDIKLDLARPRD----ITAVEFNE 246 Query: 241 IRDDIGAEVTRVLRAQ 256 IR DI +T + A+ Sbjct: 247 IRRDITQYLTSHVSAK 262 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 144/233 (61%), Gaps = 5/233 (2%) Query: 17 GKHEIMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEVSGEISIGGQR-IKGPGLD 75 G + ++L + GEFI L+G SGCGKSTLLN IAG + +G + + G R I GP + Sbjct: 23 GIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLCGNREIAGPSPE 82 Query: 76 RGVVFQSSEALFPWLTVRENVEYGLRLRGIAS---AERRTAAERYVSLVGLRHAIDKFPG 132 R VVFQ+ +L PWLT ENV + A+ AE + ++LVGL HA K P Sbjct: 83 RAVVFQN-HSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHAEQKRPN 141 Query: 133 ELSGGMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTH 192 E+SGGM+QR IAR L +P V+LMDEPFGALDA TR LQ EL +I +TG T+V VTH Sbjct: 142 EISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTH 201 Query: 193 DIWEAILLADRVVTMTAGPRAHIKTIETVDLPHPRDPADPACMALYARIRDDI 245 D+ EA+LL+DR+V +T GP A I I V L PR+ A LY++ R + Sbjct: 202 DVDEAVLLSDRIVMLTNGPSATIGEILEVKLARPRERVMLAQDPLYSQYRTAV 254 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 171 bits (433), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 139/232 (59%), Gaps = 10/232 (4%) Query: 21 IMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEVSGEISIGGQRIKGPGLD----R 76 ++ + L I AGEF+ ++G SG GKSTLL A AG S G ++K P L R Sbjct: 21 VIQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSS----GDVQLKLPQLPGRRRR 76 Query: 77 GVVFQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSG 136 VVFQ L PW TV +NV YGL GI++ E+++ ++ + L GL +++P +LSG Sbjct: 77 AVVFQDGR-LLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLSG 135 Query: 137 GMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTHDIWE 196 G QR IAR L QP ++LMDEPF A+DA TR LQ+EL RIW++T ++FVTHDI E Sbjct: 136 GQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDIDE 195 Query: 197 AILLADRVVTMTAGPRAHIKTIETVDLPHPRDPADPACMALYARIRDDIGAE 248 A+ LADRV+ + P ++ + +DLP PR +D A A + +G + Sbjct: 196 AVFLADRVIVLGGSPATVVENLR-IDLPRPRVRSDVAFAEYVAHLSTQLGVQ 246 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 170 bits (431), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 94/200 (47%), Positives = 123/200 (61%), Gaps = 9/200 (4%) Query: 25 IDLDIRAGEFICLLGPSGCGKSTLLNAIAGF-QEVSGEISIGGQRIKGPGLDRGVVFQSS 83 + D+ + LLGPSGCGKSTLL A+AGF V GEI + G+ + PG DR VVFQ Sbjct: 62 VSFDVHQADRFVLLGPSGCGKSTLLKAVAGFILPVEGEIRLDGKAVTAPGPDRIVVFQEF 121 Query: 84 EALFPWLTVRENVEYGL---RLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSGGMRQ 140 + L PW TV++NV + L R G AE R A Y++ VGL D P +LSGGM+Q Sbjct: 122 DQLSPWKTVKQNVIFPLLASRTLGRKEAEER--ALHYLAKVGLSKFSDVHPHQLSGGMKQ 179 Query: 141 RAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTHDIWEAILL 200 R IAR L QP V+LMDEPF ALDA TR +Q EL ++W T++FVTH I EA+++ Sbjct: 180 RVAIARALAMQPRVLLMDEPFAALDALTRRKMQEELLQLWDEVHFTLLFVTHSIEEALVV 239 Query: 201 ADRVVTMTAGP---RAHIKT 217 +R+ ++ P RA I + Sbjct: 240 GNRIALLSPHPGRMRAEINS 259 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 162 bits (411), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/224 (42%), Positives = 132/224 (58%), Gaps = 12/224 (5%) Query: 21 IMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEV-SGEISIGGQRIKGPGLDRGVV 79 ++ +D + GE + LLG SG GKSTLL +AG SG G+ I GP +V Sbjct: 26 VLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADSGSAMYRGKNIYGPVAGIAMV 85 Query: 80 FQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSGGMR 139 FQS ALFPWLTV++NVE GL +G+ AER A+ + L+GL P ELSGGM+ Sbjct: 86 FQSF-ALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLDLIGLAGFGGALPRELSGGMK 144 Query: 140 QRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCT---IVFVTHDIWE 196 QR IAR LV P V+LMDE F ALD T E L+ ++ +W+ I+ V+H+I E Sbjct: 145 QRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEENRIPTKGILIVSHNIEE 204 Query: 197 AILLADRVVTMTAGP---RAHIKTIETVDLPHPRDPADPACMAL 237 A++++DR+V +++ P R+ IK +DLP PR+P AL Sbjct: 205 AVMMSDRIVVLSSSPGRIRSEIK----IDLPRPRNPDSAEVRAL 244 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 620,673 Number of extensions: 25576 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 65 Length of query: 265 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 183 Effective length of database: 917,867 Effective search space: 167969661 Effective search space used: 167969661 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)