BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1328.p (272 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 118 4e-28 gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst... 117 9e-28 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 98 4e-22 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 91 1e-19 gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate tran... 68 7e-13 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 118 bits (296), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 110/194 (56%) Query: 75 TLQQSVLASSCRILAGWGAGVVIGVPLGIFMGRFEIVRQLLDPYIEFFRFIPPIAFVTLA 134 TL + S R+ G+ A ++G+PLG+ +GR +++R LLDP ++ R +P A++ L+ Sbjct: 75 TLPLHLWKSVTRVYGGFFAAALVGIPLGLLIGRIKVIRDLLDPTLQLLRPVPVTAWLPLS 134 Query: 135 VIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGPWKMLTTVILPS 194 +I+ G G + I L+F + + NT GV+AV+ AA LG + V+LP+ Sbjct: 135 MIFFGIGPNAAIFLVFLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPA 194 Query: 195 TVPYMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRIEWVFVGIIALGLLGY 254 +P ++ G R+ G +++ +V E+ EGLGA+I R SR + V G++ +G++GY Sbjct: 195 AMPSILNGLRLGHGFAWILIVVGEMTGVPEGLGAVIMDGRMLSRTDLVIAGMVVIGIVGY 254 Query: 255 LFDRVLRIATRRLL 268 DR+L LL Sbjct: 255 STDRILVAINNYLL 268 >gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system, permease component [Janthinobacterium sp. Marseille] Length = 309 Score = 117 bits (292), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 138/239 (57%), Gaps = 15/239 (6%) Query: 11 SASASATPSKLGSRVKA---ARPFLISVIAIVGGLV----LWQLVSMTTSPLFLPSVSMT 63 +A A ATP+ + +VKA +RPFL++V+ + G+V +W+++S +S + P V+ Sbjct: 33 AAVAKATPA-VAPKVKAKWSSRPFLLAVLPPIFGMVFLILVWEIISAKSSGIPSPLVTFQ 91 Query: 64 WSAAL---ELISDGTLQQ----SVLASSCRILAGWGAGVVIGVPLGIFMGRFEIVRQLLD 116 + AL S+G Q ++LAS R+ G+G ++G+PLG +GRF+ + + + Sbjct: 92 SAQALFADPFYSNGPNDQGIGWNILASLKRVGMGFGMAALVGIPLGFMIGRFKFLSGMFN 151 Query: 117 PYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAA 176 P I + + P+A++ + ++ + + I IF +++ + +NT GVQ V + A Sbjct: 152 PIISLLKPVSPLAWLPIGLLVFKAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVA 211 Query: 177 ASLGAGPWKMLTTVILPSTVPYMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARN 235 L WK++T ++ PS +PYM+TG R+A+G ++L +V+AE+++ G+G +W N Sbjct: 212 KVLKLSEWKIVTKILFPSVLPYMLTGVRLAIGTAWLVIVAAEMLTGGVGIGFWVWDEWN 270 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 86/257 (33%), Positives = 129/257 (50%), Gaps = 7/257 (2%) Query: 8 ATASASASATPSKL-GSRVKAARPFLISVIAIVGGLVLWQLVSMT--TSPLFLPSVSMTW 64 AT A+A+ PS S +K P+++ V+ I +WQ+ S S LP Sbjct: 9 ATPGAAAAKAPSTWRASGLKKLVPWIVPVLLIS----VWQIASQLGWLSSRILPEPFAVA 64 Query: 65 SAALELISDGTLQQSVLASSCRILAGWGAGVVIGVPLGIFMGRFEIVRQLLDPYIEFFRF 124 AA EL G L V S R + G +G+ LG+ G F+ LLD ++ R Sbjct: 65 KAAWELALSGELWTHVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRN 124 Query: 125 IPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGPW 184 IP +A + L ++W G E SKI L+ F V LNT G+++V+ + A S G W Sbjct: 125 IPALALIPLVILWFGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGW 184 Query: 185 KMLTTVILPSTVPYMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRIEWVFV 244 + VILP +P ++ G R ++G ++ ++ AE +SA+ G+G + AR F + + V V Sbjct: 185 SLYRDVILPGALPSILVGVRFSLGLVWVLLIVAETISAQSGIGYMTMNAREFLQTDVVLV 244 Query: 245 GIIALGLLGYLFDRVLR 261 GI+ LLG L D V R Sbjct: 245 GILLYALLGKLADVVSR 261 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 5/197 (2%) Query: 76 LQQSVL----ASSCRILAGWGAGVVIGVPLGIFMGRFEIVRQLLDPYIEFFRFIPPIAFV 131 L+Q +L AS R+ +G+ G V+ + G+F+G + +P + R IP +A+V Sbjct: 89 LEQGLLVHISASVARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWV 148 Query: 132 TLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGPWKMLTTVI 191 L ++W G E KI LI F + L ++G++ V+ + G + ++ Sbjct: 149 PLLLLWFGIDETPKITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIV 208 Query: 192 LPSTVPYMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRIEWVFVGIIALGL 251 LP+ +P + TG R + +++ +V+AE+++A +G+G L+ R SR + V I L + Sbjct: 209 LPAALPSLFTGLRNGLSLAWMFLVAAELIAATKGIGYLLTDGRETSRPDVVLAAIFLLAI 268 Query: 252 LGYLFDRVLR-IATRRL 267 LG L D +L+ + TR+L Sbjct: 269 LGKLTDGLLKWLETRKL 285 >gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 294 Score = 67.8 bits (164), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 8/246 (3%) Query: 21 LGSRVKAARPFLISVIAIVGGLVLWQLVSM-TTSPLFLPSVSMTWSAALELISDGTLQQS 79 LGSR+ A SVI +V V+W++V+ + L LP+ T A +E IS G L Sbjct: 35 LGSRLWAQGWLRKSVILVVLA-VIWEVVARWQDNELLLPTFIATAQALVEGISSGELLAK 93 Query: 80 VLASSCRILAGWGAGVVIGVPLGIFMGRFEIVRQLLDPYIEFFRFIPPIAFVTLAVIWLG 139 V S +L G+ GV+ L ++ R LLD +P IA + LA++W G Sbjct: 94 VGISLSVLLQGYAIGVLAAFILTTLAVSTQLGRDLLDTLTSMLNPLPAIALLPLALLWFG 153 Query: 140 PGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAA-SLGAGPWKMLTTVILPSTVPY 198 G S + ++ ++ ++ + LNT AG Q V P LR A + G + +++P+ +P Sbjct: 154 IGRGSLVFVLVHSVLWPMALNTYAGFQGV-PDTLRMAGRNYGLRGIPYVLQILVPAALPA 212 Query: 199 MVTGARIAMGNSFLTVVSAEIV----SAREGLGALIWTARNFSRIEWVFVGIIALGLLGY 254 +++G +I ++ T+++AE+V S + GLG I+ RN + VF G+ + L+G Sbjct: 213 ILSGLKIGWAFAWRTLIAAELVFGASSGKGGLGWYIFQNRNELYTDKVFAGLATVILIGL 272 Query: 255 LFDRVL 260 + + ++ Sbjct: 273 MVENIV 278 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 566,515 Number of extensions: 22397 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 6 Length of query: 272 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 190 Effective length of database: 917,867 Effective search space: 174394730 Effective search space used: 174394730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)