BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1323.p (311 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 194 4e-51 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 152 2e-38 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 89 3e-19 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 59 4e-10 gi|152981629|ref|YP_001351947.1| cys regulon transcriptional act... 56 2e-09 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 171/300 (57%), Gaps = 2/300 (0%) Query: 7 MNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRSTSAM 66 MNI +VDLNLL F I + R++T+AA RL ++QPA+S+AL RLR +F+DPLFVR++ M Sbjct: 1 MNIASVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGM 60 Query: 67 VPTETAIRLHEPIARALGIIHEALHTHASFDPVTATRTFHLVMSDMSCSHVLPMLMEELA 126 PT A +L EP++RA +I AL ++ FDP T T+TF M+++ +LP L++ + Sbjct: 61 QPTPYAEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQ 120 Query: 127 HAAPHVSLEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLYDDYICMLRRAHP 186 AAP+ + V+++ + AM NG+IDLA G P L Q + D + C++R+ HP Sbjct: 121 VAAPNACVRVRRIPEQGAKEAMANGEIDLAVGLFPYLKAGFYQQRLYTDKFACIVRQGHP 180 Query: 187 LAGQPLTMENLLQLRYVYANTNTTGHQLA-EDVLRNAGVKRDFALRMPHFTVAPQIVRHT 245 LT + + +V + TGH A E +L ++R + +F V P I+ T Sbjct: 181 TVHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTEHLRRKIVMTSQNFLVLPMIIEQT 240 Query: 246 DLALFLPRSIAER-HNLDDAFVLLDLPLEMPRIPVSIYTHTRFSADSGIQWLRSLLIEMF 304 D +P +A++ + +L+ P+ P + + + H RF D +W+R L++ +F Sbjct: 241 DAIATIPFRMAQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPANKWMRDLMVTLF 300 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 152 bits (384), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 156/305 (51%), Gaps = 12/305 (3%) Query: 7 MNIGAVDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRSTSAM 66 M+ +DLNLL+ F + ++LT AA+ L +TQPAVS+ALRRLR+ D L +R+ + Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGV 60 Query: 67 VPTETAIRLHEPIARALGIIHEALHTHASFDPVTATRTFHLVMSDMSCSHVLPMLMEELA 126 PT A L + RAL + EA T +FD A TF + M+D + + LP L+ + Sbjct: 61 KPTSRAEELWPVVRRALSDL-EAAVTPDTFDVSRANTTFRMAMADATAALWLPFLVRAIE 119 Query: 127 HAAPHVSLEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQS-----------QLVLYD 175 AP +++ + + + GDIDLA G+ PG+ S + + Sbjct: 120 KDAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTG 179 Query: 176 DYICMLRRAHPLAGQPLTMENLLQLRYVYANTNTTGHQLAEDVLRNAGVKRDFALRMPHF 235 +Y+C++R+ HPLA LT++N ++ + + L ++ L N G +R L + F Sbjct: 180 EYVCVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQF 239 Query: 236 TVAPQIVRHTDLALFLPRSIAERHNLDDAFVLLDLPLEMPRIPVSIYTHTRFSADSGIQW 295 A ++V +DL LPR + + +A + DLP E+P + V + H R + + +W Sbjct: 240 FTAGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHKW 299 Query: 296 LRSLL 300 LR L Sbjct: 300 LREQL 304 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 128/293 (43%), Gaps = 6/293 (2%) Query: 12 VDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTET 71 +D++L++ ++ ++++ A +L+ QP++S +LR+LRE+ DPL VR MVPT+ Sbjct: 8 LDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 Query: 72 AIRLHEPIARALGIIHEALHTHASFDPVTATRTFHLVMSDMSCSHVLPMLMEELAHAAPH 131 L + R L +F P RTFH+ D + ++ L +P Sbjct: 68 GESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRESPK 127 Query: 132 VSLEVQQMAME-NLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLYDDYICMLRR----AHP 186 + + + + + + +G++DL +PE + D +C++R A Sbjct: 128 SHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRSDCAYAKR 187 Query: 187 LAGQPLTMENLLQLRYVYANTNTTG-HQLAEDVLRNAGVKRDFALRMPHFTVAPQIVRHT 245 A +T+E+ L L + + G H + L ++R+ + HF + P +V T Sbjct: 188 TAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLRRNIVVESAHFRMLPYMVEKT 247 Query: 246 DLALFLPRSIAERHNLDDAFVLLDLPLEMPRIPVSIYTHTRFSADSGIQWLRS 298 DL L + + + +P++ P + H R + +WLR+ Sbjct: 248 DLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 58.9 bits (141), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 13/185 (7%) Query: 12 VDLNLLKTFIVIWELRSLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTET 71 + L L+ F+ + EL T AA+RLH+TQ A+S +R L + + LF R T + TE Sbjct: 3 LTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLTEH 62 Query: 72 AIRLHEPIARALGIIHEALHTHASFDPVTATRTFHLVMSDMSCSHVLPM-----LMEELA 126 R L + A+ S + V R V +CS VL + M E A Sbjct: 63 GEEFLLTARRVLSELEVAV--MQSRESVNYKRGRVAV----ACSTVLAVTLLTPFMREFA 116 Query: 127 HAAPHVSLEVQQMAMENLGAAMRNGDIDLAFGYLPGLPEDCQSQLVLYDD-YICMLRRAH 185 P + L ++ +A E++ + NGD+D + G PE S+L ++ D ++ ++ + H Sbjct: 117 QRHPGIKLMLRDVAEESIKKRLLNGDVDFSVGTQLN-PESEISELPIFSDHFVLLMPKGH 175 Query: 186 PLAGQ 190 PL Q Sbjct: 176 PLTKQ 180 >gi|152981629|ref|YP_001351947.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 304 Score = 56.2 bits (134), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 4/206 (1%) Query: 28 SLTAAADRLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTETAIRLHEPIARALGIIH 87 +LT A L+ +Q VS ++ L + LFVRS + A I + + + Sbjct: 18 NLTEVAAVLYTSQSGVSKQIKDLEDELGIDLFVRSGKRLTSVTRAGDGAVEIVKRILLET 77 Query: 88 EALHTHASFDPVTATRTFHLVMSDMSCSHVLPMLMEELAHAAPHVSLEVQQMAMENLGAA 147 E L +AS T + + + LP ++E+ + P V LE+ Q + A Sbjct: 78 ENLRRYASQYSGVDTGQLIIAATHTQARYTLPRVVEQFNNEFPKVKLELHQGTPNQVAAM 137 Query: 148 MRNG--DIDLAFGYLPGLPEDCQSQLVLYDDYICMLRRAHPLAGQ-PLTMENLLQLRYVY 204 + NG DI +A L P D + ++ ++ HPL + P+T+E++ Q + Sbjct: 138 ISNGEADIGIASEVLDQSP-DILAYPCFSWNHQVIVPLGHPLTKKAPVTLEDIAQYPLIT 196 Query: 205 ANTNTTGHQLAEDVLRNAGVKRDFAL 230 N TG + + AG+ DF L Sbjct: 197 YNPQFTGRKCVDAAFSQAGLVPDFRL 222 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 716,483 Number of extensions: 29276 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 7 Length of query: 311 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 228 Effective length of database: 914,170 Effective search space: 208430760 Effective search space used: 208430760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)