BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1322.p
         (75 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983331|ref|YP_001355340.1| NAD-dependent formate dehydroge...    87   1e-19

>gi|152983331|ref|YP_001355340.1| NAD-dependent formate
          dehydrogenase delta subunit [Janthinobacterium sp.
          Marseille]
          Length = 76

 Score = 87.4 bits (215), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 52/66 (78%)

Query: 4  EHLVKMANQIGNFFSTMPDRDQAIADLATHLKRFWEPRMRKAFLAHVEQTQGAGVDAIVL 63
          ++L+KMANQIG+FF TM DR++++ ++A HLKR W+PRMR+A + HVEQ  G G+  IVL
Sbjct: 7  DNLIKMANQIGDFFETMRDRNKSLEEIAGHLKRSWDPRMRRALMEHVEQHNGEGLKPIVL 66

Query: 64 EAVSRH 69
          +AV  H
Sbjct: 67 DAVRTH 72


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.132    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 161,222
Number of extensions: 4957
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 75
Length of database: 1,221,021
Length adjustment: 46
Effective length of query: 29
Effective length of database: 1,050,959
Effective search space: 30477811
Effective search space used: 30477811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 122 (51.6 bits)