BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1321.p
         (284 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981193|ref|YP_001355341.1| formate dehydrogenase associate...   394   e-111
gi|152981362|ref|YP_001352095.1| formate dehydrogenase accessory...    57   1e-09
gi|152981325|ref|YP_001353655.1| formate dehydrogenase accessory...    56   2e-09

>gi|152981193|ref|YP_001355341.1| formate dehydrogenase associated
           protein [Janthinobacterium sp. Marseille]
          Length = 275

 Score =  394 bits (1013), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 182/256 (71%), Positives = 223/256 (87%)

Query: 28  VQVDRWRDGQRETVDDVVAEEVPIALEYNGISHAVMMATPTDLEDFALGFSLTEGILAAP 87
           V V++W   Q    +D VAEEVPIALEYNGISHAVM+A+P DLEDFALGFSL+EGIL   
Sbjct: 15  VPVEKWDADQHTICEDDVAEEVPIALEYNGISHAVMLASPYDLEDFALGFSLSEGILKDK 74

Query: 88  GELYECEILPGCEGVQVQMRIATERFVALKEKRRNLTGRTGCGLCGAETLEQAVRHPQAV 147
            ELY+CE++PGCEG+QVQMRIATERFV LK+KRRN+TGRTGCGLCGAETLEQA+RHPQA 
Sbjct: 75  SELYDCEVVPGCEGIQVQMRIATERFVTLKDKRRNMTGRTGCGLCGAETLEQAIRHPQAT 134

Query: 148 AAGALFTVQQVHAAFEQMQSRQQLQQVTGATHAAAWMDVEGRIVLVREDVGRHNALDKLI 207
              A+F+ +Q++A  + M+S+Q+LQ+ TGATHAAAW++++G + LVREDVGRHNALDKLI
Sbjct: 135 VGHAMFSARQIYAGMKAMKSQQRLQKHTGATHAAAWLNLDGSVDLVREDVGRHNALDKLI 194

Query: 208 GALAQEGADFSQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRLAEETDVTLLG 267
           GA+A +  DF+QGAA+ITSRASYEMVQK+AT+GIGF+AA+SAPT+LAI+LAEET+VTL+G
Sbjct: 195 GAMADDKRDFTQGAALITSRASYEMVQKSATMGIGFLAAISAPTSLAIQLAEETNVTLIG 254

Query: 268 FVRKQGHVVYARPQRL 283
           FVR Q HVVYA+  RL
Sbjct: 255 FVRDQSHVVYAQAHRL 270


>gi|152981362|ref|YP_001352095.1| formate dehydrogenase accessory
           protein fdhD [Janthinobacterium sp. Marseille]
          Length = 287

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%)

Query: 158 VHAAFEQMQSRQQLQQVTGATHAAAWMDVEGRIVLVREDVGRHNALDKLIGALAQEGADF 217
           ++   E ++  + + +  G+ H+ A     G ++   EDVGRHNA+D + G +  +    
Sbjct: 151 LYKIIETIRVHRSVYKQAGSVHSCALFSANGELIHFVEDVGRHNAVDAIAGKMWFDDVSG 210

Query: 218 SQGAAIITSRASYEMVQKAATVGIGFIAAVSAPTALAIRLAEETDVTLL 266
           +      T R + EMV K A +GI F+ + S  T +   +AE  +++LL
Sbjct: 211 ADKIFYTTGRLTSEMVMKGAQMGIPFLLSRSGATQMGHMVAERLNMSLL 259


>gi|152981325|ref|YP_001353655.1| formate dehydrogenase accessory
           protein FdhD [Janthinobacterium sp. Marseille]
          Length = 281

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%)

Query: 176 GATHAAAWMDVEGRIVLVREDVGRHNALDKLIGALAQEGADFSQGAAIITSRASYEMVQK 235
           G+ H       EG +    EDVGRHNA+D + G +  E    +      T R + EMV K
Sbjct: 160 GSVHGCGLFSSEGELQYFIEDVGRHNAVDSIAGIMWLENISGADKVFYTTGRLTSEMVIK 219

Query: 236 AATVGIGFIAAVSAPTALAIRLAEETDVTLL 266
            A +G+ F+ + S  T +   +AE+ ++TLL
Sbjct: 220 GAQMGMPFLISRSGTTQMGHLVAEKVNMTLL 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 649,352
Number of extensions: 25939
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 3
Length of query: 284
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 202
Effective length of database: 917,867
Effective search space: 185409134
Effective search space used: 185409134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)