BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1319.p (520 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydroge... 831 0.0 gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [J... 305 6e-84 gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subu... 255 4e-69 >gi|152981173|ref|YP_001355343.1| NAD-dependent formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 518 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/507 (77%), Positives = 443/507 (87%) Query: 7 VTIYVPRDSTALALGANQVAEAIRAEADKRGQSIKLVRNGSRGMFWLEPLVEVSTAAGRV 66 VTI+VPRDSTALALGAN+ A AI EA RG IKLVRNGSRGMFWLEPLVEV+T AGR+ Sbjct: 3 VTIFVPRDSTALALGANETAAAIEREAKARGIDIKLVRNGSRGMFWLEPLVEVATDAGRI 62 Query: 67 AYGPVAADDVGSLFDAGLLAGGQHRLHLGLTEEIPFLKNQERLTFARVGIIDPLSLEDYL 126 +GP+ +V LFDAG GG H LGLTEEIP+LK QERL F RVGI DP+SLEDYL Sbjct: 63 GFGPIEEHEVAGLFDAGFTTGGSHPKALGLTEEIPYLKKQERLQFVRVGITDPVSLEDYL 122 Query: 127 AYDGYVGLKNALAKTPEAIVEEMIASGLRGRGGAAFPTGIKWQTVLRAPATQKYVVCNAD 186 A+DGYVGLK A+A P AIV+E+ SGLRGRGGAAFPTGIKW+TVL A A QKY+ CNAD Sbjct: 123 AHDGYVGLKKAIAMEPAAIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAEAAQKYIACNAD 182 Query: 187 EGDSGTFSDRMIMEDDPFTLIEGMTIAALAVGATEGYVYVRSEYPHSIATMNEAIAIATA 246 EGDSGTFSDRM+MEDDPF LIEGMTIA LAV ATEGY+YVRSEYPHSIA +NEAI A A Sbjct: 183 EGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVKATEGYIYVRSEYPHSIANLNEAIVAANA 242 Query: 247 RGYLGHDILGSGKSFHLEVRKGAGAYICGEETAMLESLEGKRGVVRAKPPLPALEGLFGK 306 GYLG +ILGSG++F+L+VRK AGAY+CGEETAMLES+EGKRG+VRAKPPLPAL+GLFG+ Sbjct: 243 AGYLGENILGSGRTFNLQVRKAAGAYVCGEETAMLESIEGKRGMVRAKPPLPALQGLFGQ 302 Query: 307 PTVINNLISLASVPVILARGAEFYKNYGVGRSHGTLPFQLAGNIKQGGLVEKAFGLTLRQ 366 PTVINN+ISL++VP+IL+RGAEFYKNYG+GRS GTLP QLAGN+K GGLVEKAFG+TLR+ Sbjct: 303 PTVINNVISLSAVPLILSRGAEFYKNYGMGRSRGTLPMQLAGNLKYGGLVEKAFGVTLRE 362 Query: 367 LLEDFGGGSASGRPLRAVQMGGPLGAYLPPSQFDTPLDYEAFSAIGAMIGHGGLVAFDDS 426 LL DFGGGS SGRP+RAVQ+GGPLGAY+P S FDTP DYEAF+A+ + +GHGGLVAFDD+ Sbjct: 363 LLYDFGGGSESGRPIRAVQVGGPLGAYMPESLFDTPFDYEAFAAVASTVGHGGLVAFDDT 422 Query: 427 VDMVKQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANQDRGQQVHLLKSLCDTML 486 VDM KQARYAM FCA ESCGKCTPCRIGSTRGVEV+DKIIANQ+R QQ+HLL+ LCD M+ Sbjct: 423 VDMAKQARYAMHFCAEESCGKCTPCRIGSTRGVEVMDKIIANQNRPQQIHLLRDLCDVMV 482 Query: 487 NGSLCAMGGMTPFPVLSALNHFPEDFG 513 GSLCAMG MTPFPVLSALNHFPEDFG Sbjct: 483 TGSLCAMGNMTPFPVLSALNHFPEDFG 509 >gi|152980581|ref|YP_001353157.1| NADH dehydrogenase I chain F [Janthinobacterium sp. Marseille] Length = 431 Score = 305 bits (780), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 170/401 (42%), Positives = 238/401 (59%), Gaps = 10/401 (2%) Query: 118 DPLSLEDYLAYDGYVGLKNALAK--TPEAIVEEMIASGLRGRGGAAFPTGIKWQTVLRAP 175 D LE+Y+ GY LK L++ TPE ++ E+ AS LRGRGGA FP+G+KW + + Sbjct: 20 DNWGLEEYVKRGGYASLKRILSEGMTPEQVIAEVKASTLRGRGGAGFPSGLKWSFMPKNF 79 Query: 176 ATQKYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAALAVGATEGYVYVRSEYPHSIA 235 A QKY+VCN+DEG+ GTF DR I+ +P ++IEGMTIAA A+G + GY Y+ E Sbjct: 80 AGQKYLVCNSDEGEPGTFKDRDILRYNPHSVIEGMTIAAYAMGVSVGYNYIHGEIFAEYD 139 Query: 236 TMNEAIAIATARGYLGHDILGSGKSFHLEVRKGAGAYICGEETAMLESLEGKRGVVRAKP 295 EA+ A A G+LG +ILGS SF L G GAYICGEETA+LESLEGK+G R KP Sbjct: 140 RFEEALEQARAAGFLGDNILGSTHSFQLHAFHGFGAYICGEETALLESLEGKKGQPRFKP 199 Query: 296 PLPALEGLFGKPTVINNLISLASVPVILARGAEFYKNYGVGRSHGTLPFQLAGNIKQGGL 355 P PA GL+GKPT INN + A+VP I GAE Y G + GT F ++G+++ G Sbjct: 200 PFPASYGLYGKPTTINNTETFAAVPFIFQVGAEAYAAIGKPNNGGTKIFSVSGDVENPGN 259 Query: 356 VEKAFGLTLRQLLEDFGGGSASGRPLRAVQMGGPLGAYLPPSQFD----TPLDYEAFSAI 411 E G +LL+ GG G+ L+AV P G+ +P + D T +DY++ + Sbjct: 260 YEIPLGTPFAELLK-LAGGVRGGKKLKAVI---PGGSSVPVVKGDLMMATDMDYDSVAKA 315 Query: 412 GAMIGHGGLVAFDDSVDMVKQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANQDR 471 G+M+G G ++ D++ MVK F ESCG+CTPCR G+ ++ +I Q R Sbjct: 316 GSMLGSGAVIVMDETRCMVKALLRLSYFYYEESCGQCTPCREGTGWLYRMVHRIENGQGR 375 Query: 472 GQQVHLLKSLCDTMLNGSLCAMGGMTPFPVLSALNHFPEDF 512 + + +L S+ D + ++CA+G PV + + F E+F Sbjct: 376 PEDLDMLNSVADNIQGRTICALGDAAAMPVRAMIQQFREEF 416 >gi|152980298|ref|YP_001352092.1| formate dehydrogenase beta subunit [Janthinobacterium sp. Marseille] Length = 567 Score = 255 bits (652), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 147/397 (37%), Positives = 218/397 (54%), Gaps = 19/397 (4%) Query: 121 SLEDYLAYD---GYVGLKNALA--KTPEAIVEEMIASGLRGRGGAAFPTGIKWQTVLRAP 175 S+ D+ AY GY LK ++ + E++++ M SGLRG GGA FP+G KW+ ++R Sbjct: 184 SITDFSAYQNEGGYALLKKCVSGERDVESVIKTMEDSGLRGLGGAGFPSGRKWR-IVRGE 242 Query: 176 ATQKYVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAALAVGATEGYVYVRSEYPHSIA 235 + + N DEG+ GTF DR+ +E DP +EGM IAA AV Y+Y+R EY H Sbjct: 243 KGPRLMAVNIDEGEPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEY-HGCR 301 Query: 236 TMNEAIAIATARGYLGHDILGSGKSFHLEVRKGAGAYICGEETAMLESLEGKRGVVRAKP 295 TM EA + I + F +R+GAGAYICGEE+AM+ES+EGKRG+ R +P Sbjct: 302 TMLEA---ELEKLKANPPIANMPEIF---LRRGAGAYICGEESAMIESIEGKRGMPRLRP 355 Query: 296 PLPALEGLFGKPTVINNLISLASVPVILARGAEFYKNYGVGRSHGTLPFQLAGNIKQGGL 355 P A GLFG+PT+ +N +L V IL +G E++ ++G G + ++G +K G+ Sbjct: 356 PYVAQVGLFGRPTLEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGV 415 Query: 356 VEKAFGLTLRQLLEDFGGGSASGRPLRAVQMGGPLGAYLPPSQFDTPLDYEAFSAIGAMI 415 G+T+++L+++ GG G+ GG G LP S PLD++ G I Sbjct: 416 KLAPAGITIQELIDEHCGGMLEGQTFYGYLPGGASGGILPASMNAIPLDFDTLQPYGCFI 475 Query: 416 GHGGLVAFDDSVDMVKQARYAMQFCAVESCGKCTPCRIGSTRGVEVIDKIIANQDRGQQV 475 G ++ D V+ AR M F ESCG+CTPCR+G+ + E+I K + V Sbjct: 476 GSAAVIVLSDKDTAVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKKPKWD------V 529 Query: 476 HLLKSLCDTMLNGSLCAMGGMTPFPVLSALNHFPEDF 512 LL+ L M + S+C +G P P+ + +FP + Sbjct: 530 GLLEDLSQVMRDSSICGLGQAAPNPIDCVVKYFPHEL 566 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,299,824 Number of extensions: 59365 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 162 Number of HSP's successfully gapped: 3 Length of query: 520 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 433 Effective length of database: 899,382 Effective search space: 389432406 Effective search space used: 389432406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)