BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1318.p
         (158 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochro...   217   3e-58
gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E [J...    65   2e-12

>gi|152981548|ref|YP_001355344.1| formate dehydrogenase, cytochrome
           b556 subunit (formate dehydrogenase gamma subunit)
           [Janthinobacterium sp. Marseille]
          Length = 159

 Score =  217 bits (553), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/156 (65%), Positives = 122/156 (78%)

Query: 1   MKRQQVFDVAAVRGIIAERKHMAGAMLPILHGIQEQVGYIPADAVPMIAGELNVSRAEVH 60
           M  Q  FD+AAV  IIA+RK   GA+LPILH IQ  VGYIP   VP IA  LN+SRAEVH
Sbjct: 1   MNTQTPFDLAAVEAIIAQRKATPGALLPILHDIQGVVGYIPPSIVPAIAEGLNISRAEVH 60

Query: 61  GVISFYHFFRQEPAGQHVVQVCRAEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEP 120
           GVI++YHFFRQ P G+HVVQ+CRAEACQARG E+LA+HA+ +LGC FH T+ D +FTL+ 
Sbjct: 61  GVITYYHFFRQHPVGEHVVQICRAEACQARGCESLADHAKELLGCDFHGTTDDNKFTLQT 120

Query: 121 VYCLGQCAIGPNLTLDDELHARVDADKFKRLIQAKR 156
           VYCLGQCA GP + +DD+L+ARV  +KF  LIQAKR
Sbjct: 121 VYCLGQCASGPAIQIDDDLYARVSKEKFNSLIQAKR 156


>gi|152980127|ref|YP_001353156.1| NADH dehydrogenase subunit E
           [Janthinobacterium sp. Marseille]
          Length = 159

 Score = 64.7 bits (156), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 57/115 (49%)

Query: 24  GAMLPILHGIQEQVGYIPADAVPMIAGELNVSRAEVHGVISFYHFFRQEPAGQHVVQVCR 83
            A++  L   Q++  ++P + +  +A  L +    V  V +FY+ +  +P G+  + VC 
Sbjct: 25  SAVMAALQIAQDETRWLPPEVMQDVADYLGMPAIAVQEVATFYNMYNTKPVGKFKISVCT 84

Query: 84  AEACQARGSEALAEHAQNVLGCGFHETSADGQFTLEPVYCLGQCAIGPNLTLDDE 138
              CQ  G E  A + +  LG  + ET+ D  FTL    C+G C   P + ++++
Sbjct: 85  NLPCQLSGGEKAAHYLKQKLGIDYRETTDDDLFTLVEGECMGACGDAPVMLVNNK 139


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 363,730
Number of extensions: 14237
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 3
Length of query: 158
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 82
Effective length of database: 940,049
Effective search space: 77084018
Effective search space used: 77084018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)