BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1317.p (548 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982379|ref|YP_001355362.1| major facilitator superfamily o... 532 e-152 gi|152980784|ref|YP_001354232.1| major facilitator superfamily o... 77 3e-15 gi|152982869|ref|YP_001355198.1| major facilitator superfamily o... 69 8e-13 gi|152982521|ref|YP_001354332.1| major facilitator superfamily o... 60 2e-10 gi|152982449|ref|YP_001355163.1| major facilitator superfamily o... 60 3e-10 >gi|152982379|ref|YP_001355362.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 467 Score = 532 bits (1370), Expect = e-152, Method: Compositional matrix adjust. Identities = 279/499 (55%), Positives = 361/499 (72%), Gaps = 35/499 (7%) Query: 4 DFLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADVG 63 DF +K+ +VA PGFNRW+VPPAALA+HLCIG AY FSVF PLSK +G+ +P Sbjct: 3 DFFSKDKSVAGPGFNRWMVPPAALAVHLCIGQAYAFSVFNGPLSKLIGIDSP-------- 54 Query: 64 FFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCGGLL 123 + DWK++ LGW++++ V LG++AA G WLE GPR VAA C+ GG L Sbjct: 55 -------APDDWKLTTLGWIFSLAIVFLGLAAAFGGKWLEKVGPRLTMFVAACCFGGGFL 107 Query: 124 ISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGA 183 ISA+GV HQIWL++LG GVIGG+GLGLGY+SPVSTLIKWFPDRRGMATGMAIMGFGGGA Sbjct: 108 ISAIGVSLHQIWLVYLGYGVIGGIGLGLGYVSPVSTLIKWFPDRRGMATGMAIMGFGGGA 167 Query: 184 LVGTPLADALMKKFASPTSVGVWETFVVMAIIYFVFMMAGAFGYRVPPTGWKPAGWTPPV 243 ++G PL+ LM+ F + TSVGV ETFVVM ++YF+ M GA R+PP WKPAGW PPV Sbjct: 168 MIGAPLSVYLMEHFKTATSVGVTETFVVMGVLYFISMSIGAMAIRIPPPDWKPAGWVPPV 227 Query: 244 AKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLGV 303 ++ MIT++HV + + PQF+L+WLVLCLNV+AGIGV+G AS M+QE F Sbjct: 228 VENK--MITKHHVDIDQAMKTPQFYLLWLVLCLNVTAGIGVLGQASVMIQETF------- 278 Query: 304 NIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFVL 363 + T A AAGF GL+S+FN+GGRF W+S SD+ GRK TY IFF++G +L Sbjct: 279 ----------KDTVSVAAAAGFVGLLSVFNMGGRFFWSSASDYLGRKRTYFIFFIVGIIL 328 Query: 364 YVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWAT 423 Y +P++ +G++ LFV II+SMYGGGF+TVP YLADLFGT+ VGAIHGRLLTAW+ Sbjct: 329 YSCIPYTGHSGSVALFVIFYGIIVSMYGGGFSTVPVYLADLFGTKFVGAIHGRLLTAWSA 388 Query: 424 AGILGPVVVNYMREYQLSLGMPKSQVYNTTMYILAGMLVLGLICNLLIRPVAAKHFMTPE 483 AG+LGPV+VNY+R+YQ+ G+ K Y TMYI+AG+L++G +CN+LI+PV AKH+M + Sbjct: 389 AGVLGPVLVNYIRQYQIDQGVAKGDAYAVTMYIMAGLLLVGFVCNMLIKPVDAKHYMR-D 447 Query: 484 ELAREKQLAHEKSAADAVA 502 ++A+ + H +A A Sbjct: 448 DMAKANKPVHGGNAQSTAA 466 >gi|152980784|ref|YP_001354232.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 441 Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 141/343 (41%), Gaps = 40/343 (11%) Query: 102 LEHAGPR----KAGVVAAICWCGGLLISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPV 157 ++ GPR ++ A+ W L +W ++ G++GGVG G+ Y+ + Sbjct: 77 IDKFGPRMLLSAGAILTALSWV-------LAASATSVWGLYFSYGLLGGVGTGIIYVGVI 129 Query: 158 STLIKWFPDRRGMATGMAIMGFGGGALVGTPLADALMKKFASPTSVGVWETFVVMAIIYF 217 +++WFP++RG A GM G+G GA++ T + +K S GV T + +I Sbjct: 130 GLMVQWFPEKRGFAVGMVAAGYGFGAIMTTFAISSSIK------SAGVSSTLMTFGLIIG 183 Query: 218 VFMMAGAFGYRVPPTGWKPAGWTPPVAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLN 277 V A G R P + S A ++ S++ P FWL+++++ + Sbjct: 184 VVGFLAAQGMRRPKAD-EVVELAVRHKASDANKESKYSYKSSEMLKKPVFWLMFIMMTMM 242 Query: 278 VSAGIGVIGIASPMLQEVFGGKLLGVNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGR 337 ++G+ VI ++ G +D V +AAL T I F G Sbjct: 243 STSGLMVISQMGAFAKD----------FGVHDAMV---FGMAALPLALT--IDRFANGLT 287 Query: 338 ---FAWASCSDFFGRKMTYAIFFVLGFVLYVSLPWSAKAGNIPLFVGAVCIILSMYGGGF 394 F W SD GR+ T +F G W N LFV ++ +G F Sbjct: 288 RPFFGW--VSDRIGRENT--MFIAFGMEGVAMTLWLMTTDNPVLFVLLSGVVFFGWGEIF 343 Query: 395 ATVPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVNYMRE 437 + P+ L D FGT+ +G L A +LG + M E Sbjct: 344 SLFPSILTDTFGTKHATTNYGFLYMAQGVGSVLGGPLAAMMHE 386 >gi|152982869|ref|YP_001355198.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 430 Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 113/483 (23%), Positives = 195/483 (40%), Gaps = 71/483 (14%) Query: 6 LNKEHTVAKPGFNRWL-VPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGADVGF 64 L+ TV++ RW+ + +A+ + + YG+++F P++ G + V F Sbjct: 7 LSATGTVSRSASYRWMQLILGIVAMAMIANLQYGWTLFVDPIAAKHGWSR---AAIQVAF 63 Query: 65 FAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCG-GLL 123 +F + W + + GW F GPR +V I CG G Sbjct: 64 --TIFVLTETWLVPIEGWFVDKF------------------GPRPVVLVGGIL-CGLGWF 102 Query: 124 ISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFGGGA 183 I++ ++ + VI G+G G Y + V +KWFPDRRG+A G+ GFG G+ Sbjct: 103 INSFADSLATLYF----AAVISGIGAGAVYGTCVGNALKWFPDRRGLAAGLTAAGFGAGS 158 Query: 184 LVGTPLADALMKKFASPTSVGVWETFVVMAIIY-FVFMMAGAFGYRVPPTGWKPAGWTPP 242 V A++ + G + F+ I + ++ F R P K Sbjct: 159 AVTIIPISAMI------ATRGYQDAFLYFGIGQGIIVVLVALFLTRAPEH--KKGDAVAN 210 Query: 243 VAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKLLG 302 V + T+ S+V P FW+++ + + + G+ + ++ K+ Sbjct: 211 VQQ------TKRDYKPSEVLREPVFWIMYAMFVMVAAGGLMATAQLGSIARDF---KVFD 261 Query: 303 VNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLGFV 362 V + L++ T A+ GL F F W SD GR+ T I F + V Sbjct: 262 VQVSMMGLTLPALTFALAIDRVLNGLTRPF-----FGW--VSDQIGREPTMFIAFAIEAV 314 Query: 363 LYVSLPWSAKAGNIPL-FVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAW 421 ++L G+ P FV I+ +G ++ P+ AD FG++ + G L TA Sbjct: 315 GILAL---FHYGHNPFAFVILTGIVFFAWGEIYSLFPSTCADTFGSKYAASNAGLLYTAK 371 Query: 422 ATAGILGPVVVNYMREYQLSLGMPKSQVYNTTMYILAGML--VLGLICNLLIRPVAAKHF 479 TA +L P LS + + ++++A L L+ +++P+ AKH Sbjct: 372 GTASLLVP----------LSAVLASATGGWYAVFVVASALNATAALMAWFVLKPLRAKHM 421 Query: 480 MTP 482 P Sbjct: 422 AKP 424 >gi|152982521|ref|YP_001354332.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 434 Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 99/385 (25%), Positives = 157/385 (40%), Gaps = 66/385 (17%) Query: 64 FFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALW----GGWL-EHAGPRKAGVVAAICW 118 F + S W + + +++F V+ W GWL + GPR VVA Sbjct: 50 LFVEPMESKHHWGTASIQLAFSIFIVI-----ETWLVPIEGWLGDKFGPRP--VVA---- 98 Query: 119 CGGLLISALG--VKTHQIWL-MWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMA 175 GG + + LG + ++ L M + V+ G+G G Y + V +KWFPDRRG+A G+ Sbjct: 99 -GGAIFAGLGWIMNSYADSLTMLYAAAVVSGIGAGCVYGTCVGNALKWFPDRRGLAAGLT 157 Query: 176 IMGFGGGALVGT-PLADALMKKFASPTSVGVWETFVVMAIIYFVFMMAGAFGYRVPPTGW 234 GFG GA V P+A+ + S G +TF+ II V + A P Sbjct: 158 AAGFGAGAAVTVIPIANMI-------GSAGYEKTFLTFGIIQGVAIFILALLLVRPQ--- 207 Query: 235 KPAGWTPPVAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQE 294 P A+S +++ ++ P FWL++++ L + G+ P+ + Sbjct: 208 -----APKHAQSKVANVSKVDYTTRQMLTKPVFWLIYVIYVLVAAGGVMATAQLGPIAHD 262 Query: 295 VFGGKLLGVNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASC---SDFFGRKM 351 FG +S T T +S+ N+ C SD GR+ Sbjct: 263 -FG------------ISSTPMTMFGVTLPLLTLALSIDNVANGLTRPLCGFISDKIGREN 309 Query: 352 TYAIFFV------LGFVLYVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLF 405 T + F+ LG + Y P+ LF+ +I +G F+ PA D F Sbjct: 310 TMFLVFIGEGLALLGLMQYGHNPY--------LFITFAALIFMFWGEIFSIFPAICGDTF 361 Query: 406 GTQMVGAIHGRLLTAWATAGILGPV 430 G++ A G L TA A ++ P+ Sbjct: 362 GSKYATANAGTLYTAKGVAALMVPL 386 >gi|152982449|ref|YP_001355163.1| major facilitator superfamily oxalate/formate antiporter [Janthinobacterium sp. Marseille] Length = 441 Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 85/346 (24%), Positives = 143/346 (41%), Gaps = 50/346 (14%) Query: 153 YISPVSTLIKWFPDRRGMATGMAIMGFGGGALVGTPLADALMKKFASPTSVGVWETFVVM 212 Y + ++ +KWFPDRRG+A G+ G G T L A M + S G ETF+ Sbjct: 128 YATCINNALKWFPDRRGLAVGLTAGG-YGAGSAATILPIAAMIE-----SSGFQETFLFF 181 Query: 213 AIIYFVFMMAGAFGYRVPPTGWKPAGWTPPVAKSSATMITQNHVH-VSKVWGIPQFWLVW 271 I+ A+ R P G K+SA ++ + + + FWL++ Sbjct: 182 GILQGSLAFVAAWFLRSPAKG---------EVKASAKLVQATRDYTLKEALNTKLFWLMF 232 Query: 272 LVLCLNVSAGIGVIGIASPMLQEVFGGKLLGVNIGFNDLSVEQKTAIAALAAGFTGLISL 331 + V+ G+ + + Q++ G K V++ F +AAL L + Sbjct: 233 FMFICVVTGGMMAVAQLGVIAQDL-GVKEFEVDLHF--------FVMAALPLALM-LDRI 282 Query: 332 FNIGGRFAWASCSDFFGRKMTYAIFFVLGFVLYVSL------PWSAKAGNIPLFVGAVCI 385 N R + SD GR+ T I F L ++L PW+ F+ + Sbjct: 283 MNGISRPLFGWISDNIGREKTMVIAFTLEGFGIIALGYFGHNPWA--------FLILSGV 334 Query: 386 ILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTAWATAGILGPVVVNYMREYQLSLGMP 445 + +G ++ A D FGT+ +G I+G L TA + PV +L M Sbjct: 335 VFLAWGEVYSLFSALAGDAFGTKHIGKIYGVLYTAKGIGALFVPVG---------NLMME 385 Query: 446 KSQVYNTTMYILAGM-LVLGLICNLLIRPVAAKHFMTPEELAREKQ 490 + ++T +Y +A M L ++ + +RP+ KH +L R++ Sbjct: 386 ATGTWSTVLYTVACMDLTAAILAIVALRPLLKKHVAFSADLLRKEN 431 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.141 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,414,569 Number of extensions: 63873 Number of successful extensions: 326 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 6 Length of query: 548 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 460 Effective length of database: 895,685 Effective search space: 412015100 Effective search space used: 412015100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)