BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1316.p
         (355 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982031|ref|YP_001355345.1| LysR family transcriptional reg...   498   e-142

>gi|152982031|ref|YP_001355345.1| LysR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 362

 Score =  498 bits (1281), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 236/355 (66%), Positives = 287/355 (80%)

Query: 1   MFKVHIKPHWEIAYDNEAALDTANLLTLLTAIQQSGSIARAAQLTRYSYRHAWGLLRDAE 60
           MFKV I PHWEI + N+A LDTA LL LL +IQ++GSI++AA+L   SYR++WGLLR+AE
Sbjct: 1   MFKVVINPHWEITHTNDAPLDTAVLLNLLMSIQKTGSISKAARLVDLSYRYSWGLLREAE 60

Query: 61  RMFGNALIESGRGRGTTLTDFASKLLWADRLVTARLSPTLDSLASELEVELSKTVEGKAE 120
           ++FG AL+ + RGRGTTLT  A KL+WADR + ARLSPTL+SLASELE E+ KT+ GK +
Sbjct: 61  KLFGTALLNTDRGRGTTLTPLAEKLIWADRRIRARLSPTLESLASELESEIGKTIVGKTK 120

Query: 121 KVRLNASHGFAVAALLNKINEGRLPVEVRYRHSTDAVAALSRQECDLAGFHVPLGEFEKP 180
            +RL+ASHGFAV ALL+++ E  LPV++RYR+STDAVAALSR ECDLAGFHVPLGEFEK 
Sbjct: 121 PIRLDASHGFAVDALLHQLTEANLPVDLRYRNSTDAVAALSRNECDLAGFHVPLGEFEKK 180

Query: 181 AIAAYAKWLNKRSDCLIHLAIRNQGLFIEPDNPKGLRGLADLVRTDLRFVNREAGSGTRM 240
           A+  Y +WLN R  CLIHLA+R QG+F+ P NPK + GL DL R  +RFVNR+ GSGTRM
Sbjct: 181 AVERYTQWLNPREHCLIHLAVRTQGMFVAPGNPKKITGLHDLTRPGVRFVNRQIGSGTRM 240

Query: 241 LLELMLAGAGIAHKKINGFENTEFTHSAVAAFIASGMADVGFGVQTAAHRFGLGFIPLVR 300
           LLELMLAG+ I+   I G+++ EFTHSAVAA+IASGMADVG GVQTAAHRF L FIPL+R
Sbjct: 241 LLELMLAGSNISPFDIEGYQSNEFTHSAVAAYIASGMADVGVGVQTAAHRFSLDFIPLIR 300

Query: 301 ERYFFALPAASLQDPLIRSVIDILQSDSFRKVVNNLAGYDATDMGKIQTIKEAFG 355
           ERYF ALP + + DPLI+ VID++QS  FRKV+N LAGYDA D GKI  + EAFG
Sbjct: 301 ERYFLALPLSIMDDPLIQLVIDVVQSGYFRKVINGLAGYDAGDTGKILLLSEAFG 355


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 788,518
Number of extensions: 32124
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 271
Effective length of database: 910,473
Effective search space: 246738183
Effective search space used: 246738183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)