BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1315.p (328 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 82 3e-17 gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 78 9e-16 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 64 1e-11 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 82.4 bits (202), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 139/296 (46%), Gaps = 19/296 (6%) Query: 18 LAALDARLLRLLEALLDEVHLARAAARVGLSLPAAASALERCRQLLRDPLLEDGGLQMRL 77 +A++D LL +A++ E ++ AA R+G+S PA ++AL R R + DPL M+ Sbjct: 3 IASVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGMQP 62 Query: 78 TATAQALREPLRKLLYDDGAGKDSNTVADQAQPEQGLATLARRVRILMPDYPAQVVAQAL 137 T A+ L EP+ + + N+V D AT + M + ++ L Sbjct: 63 TPYAEQLIEPVSRACELITSALQINSVFDP-------ATTTKTFSFYMTEIGEILLLPKL 115 Query: 138 YQELSAAAPLLDLEFQTWLGEADAIARLERGQTELVLGAATPALN--LRGREVLQERCVA 195 + + AAP + + + E A + G+ +L +G P L + + ++ Sbjct: 116 LKHIQVAAPNACVRVRR-IPEQGAKEAMANGEIDLAVGLF-PYLKAGFYQQRLYTDKFAC 173 Query: 196 VMRRDHPAAH-QLTLARWLDYPHLQIACHDTLNRMMDQQVAM-QGRRRRIGMVIPNFLMA 253 ++R+ HP H LT +++D PH+ + +T + +++ + + RR+I M NFL+ Sbjct: 174 IVRQGHPTVHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTEHLRRKIVMTSQNFLVL 233 Query: 254 PALLQGSDLIAVMSMHCVPAATAAHPVALTCLRPPLPLEAPPLRLLQH---RRHTD 306 P +++ +D IA + + A++ + L P+P P + + QH R H D Sbjct: 234 PMIIEQTDAIATIPFR-MAQKIASYSTGIKILESPIPF--PNVDIKQHWHERFHYD 286 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 77.8 bits (190), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 81/301 (26%), Positives = 132/301 (43%), Gaps = 26/301 (8%) Query: 17 ALAALDARLLRLLEALLDEVHLARAAARVGLSLPAAASALERCRQLLRDPLLEDGGLQMR 76 + LD LLR+ +A++ E +L RAA + ++ PA ++AL R R L D L+ ++ Sbjct: 2 SFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGVK 61 Query: 77 LTATAQALREPLRKLLYDDGAGKDSNTVADQAQPEQGLATLARRVRILMPDYPAQVVAQA 136 T+ A+ L +R+ L D A +T D ++ R+ M D A + Sbjct: 62 PTSRAEELWPVVRRALSDLEAAVTPDTF-DVSRANTTF-------RMAMADATAALWLPF 113 Query: 137 LYQELSAAAPLLDLEF----------QTWLGEAD-AIARLERGQTELVLGAATPALNLRG 185 L + + AP L++ G+ D AI +L G T +R Sbjct: 114 LVRAIEKDAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRH 173 Query: 186 REVLQERCVAVMRRDHPAAH-QLTLARWLDYPHLQIACHDTLNRMMDQQVAMQGRRRRIG 244 + V VMR++HP A +LTL + HL ++ +MD+ + GR RRI Sbjct: 174 ERLYTGEYVCVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRIL 233 Query: 245 MVIPNFLMAPALLQGSDLIAVMSMHCVPAATAAHPVALTCLRPPLPLEAPPLR--LLQHR 302 + + F A ++ SDLI V+ H + A+ +A + LP E P + +L H Sbjct: 234 LTVNQFFTAGRVVASSDLITVLPRHLI----ASTGMAEALIAKDLPFELPDVHVDMLWHE 289 Query: 303 R 303 R Sbjct: 290 R 290 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 125/291 (42%), Gaps = 26/291 (8%) Query: 21 LDARLLRLLEALLDEVHLARAAARVGLSLPAAASALERCRQLLRDPLLEDGGLQMRLTAT 80 LD L+R+L LL E +++R A ++ P+ +++L + R+L DPLL G M T Sbjct: 8 LDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 Query: 81 AQALREPLRKLLYDDGAGKDSNTVADQAQPEQGLATLARRVRILMPDYPAQVVAQALYQE 140 ++L + +++L D+ A Q E AR I PDY + Sbjct: 68 GESLMKSAKRIL-DEAEHLFIPKTAFVPQDE------ARTFHIAAPDYMNTQFFTEVIAR 120 Query: 141 LSAAAPLLDLEFQTWLGEADAIARLERGQTELVLGAATPA-LNLRGREVLQERCVAVMRR 199 L +P + + D + L G+ +LV+ +L ++ + V +MR Sbjct: 121 LRRESPKSHIVIHALGPDTDYVRLLSDGELDLVIANWDEMPEHLHMSKLFDDPIVCLMRS 180 Query: 200 D-----HPAAHQLTLARWLDYPHL---QI--ACHDTLNRMMDQQVAMQGRRRRIGMVIPN 249 D A +T+ +L PH QI H T++ +++ Q RR I + + Sbjct: 181 DCAYAKRTAKDAMTIEDYLSLPHAAPSQILPGYHGTIDTFLEK----QNLRRNIVVESAH 236 Query: 250 FLMAPALLQGSDLIAVMSMHCVPAATAAHPVALTCLRPPLPLEAPPLRLLQ 300 F M P +++ +DL+ T+ + L+ +P++ PPLR Q Sbjct: 237 FRMLPYMVEKTDLVLTAGQQF----TSFYEKTLSLKSYTVPIKFPPLRFYQ 283 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 652,061 Number of extensions: 24052 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 3 Length of query: 328 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 244 Effective length of database: 910,473 Effective search space: 222155412 Effective search space used: 222155412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 130 (54.7 bits)