BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1314.p (304 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 249 1e-67 gi|152979810|ref|YP_001352746.1| LysR family transcriptional reg... 246 2e-66 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 229 1e-61 gi|152981563|ref|YP_001352068.1| LysR family transcriptional reg... 190 8e-50 gi|152980095|ref|YP_001353263.1| LysR family transcriptional reg... 157 5e-40 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 249 bits (636), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 194/297 (65%), Gaps = 1/297 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 L DL F V+ + + A ARE+G +P ++KR+A LEQ LGVRL +RTTR++ +T +G Sbjct: 4 LSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTHEGE 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 +IL ++E++ VS ++ VP+GLL+I+ +FG GR+ ++P +S F ++PE+++ Sbjct: 64 IYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPEIEV 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAA 186 QL+L DR +L+++ D+ IR+G + + +++I ++R+LCA+PAY+K+HG P+ Sbjct: 124 QLQLSDRPANLIDQAFDIGIRIGEMPDARIIARKIAANRRLLCAAPAYIKRHGTPSVPRD 183 Query: 187 LRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIW 246 L++ QC+V+RE + ++G W + K QE++KV G L+SN GE WA+ GHGI++RS W Sbjct: 184 LQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILMRSQW 243 Query: 247 DVADSLKRGRLVRVLPQY-FQEADLCAVYPLQLKNSAKVRECVRFLQKHLDVTASSA 302 DVA L+ GRLV VL + +D+ AVYP +L SAKV V F+ S A Sbjct: 244 DVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARFASRLSEA 300 >gi|152979810|ref|YP_001352746.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 361 Score = 246 bits (627), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 118/298 (39%), Positives = 186/298 (62%), Gaps = 1/298 (0%) Query: 4 SPLLEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTE 63 + + +L F ++AR N + +AR + +P +KR+A LE LGVRL +RTTRS+ +T Sbjct: 59 TDITSELEFFVLIARLGNLSAAARALDITPPAATKRLAQLESRLGVRLVNRTTRSISLTS 118 Query: 64 DGGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPE 123 +G +A +IL +V++M + VSS PRGLL+++ + G GR ++PL+S F +P+ Sbjct: 119 EGEIYLGYAARILAEVKEMEDAVSSGGGAPRGLLRVNATLGFGRTAIAPLVSEFVRRYPQ 178 Query: 124 LKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPAD 183 +++Q E+ D+ IDLV G DL IR G + L +++++ ++R LCASP YL++HG P Sbjct: 179 VEVQFEVSDKPIDLVENGFDLAIRFGTLPDTRLNARKLMSNRRFLCASPIYLERHGTPQT 238 Query: 184 LAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILR 243 LA L +H+C+ R+ +++ WR E +KV L+SN G+I+ WA+D HGI++R Sbjct: 239 LADLSRHRCITHRQNDEAAATWRFTRDGRNEVIKVESALSSNDGDIVLGWALDAHGILIR 298 Query: 244 SIWDVADSLKRGRLVRVLPQY-FQEADLCAVYPLQLKNSAKVRECVRFLQKHLDVTAS 300 S WD+A +K GRL VLP Y ADL YP + S + R + FL +H+D+ A+ Sbjct: 299 SEWDLAKYVKSGRLKIVLPDYVLPSADLFVYYPNRRNQSTRARAFIDFLIEHIDMLAA 356 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 229 bits (585), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 115/286 (40%), Positives = 181/286 (63%), Gaps = 1/286 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 + DL F ++ + + A +A+E+G +P +SKR+A +E L VRL +RTTR + +T +G Sbjct: 4 ISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTPEGE 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 +++ ++E + + +S +GLLK+S +FG GR+ ++P LS FA +PE+++ Sbjct: 64 IYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPEVEV 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAA 186 QL L DR ++LV +G D DIR G + L +++I ++R++CASPAYL+KHG P Sbjct: 124 QLHLTDRPVNLVEQGFDADIRFGQIPDARLSARKIADNRRLVCASPAYLQKHGTPLVPRD 183 Query: 187 LRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIW 246 L+QH C+++RE ++ +G W QETVKV G L++N GE WA+DG GI++RS W Sbjct: 184 LQQHNCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIVVRSEW 243 Query: 247 DVADSLKRGRLVRVLPQY-FQEADLCAVYPLQLKNSAKVRECVRFL 291 DVA L+ GRL VL ++ +AD+ V+P + SAK R V F+ Sbjct: 244 DVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFM 289 >gi|152981563|ref|YP_001352068.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 190 bits (483), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 153/287 (53%), Gaps = 1/287 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 L+ + F + H++FA +A + +P + +RI LE+ LGVRL HR+TR + +TE+G Sbjct: 4 LKQIEAFVMAVEHNSFAAAALALQVTPVMVGRRIDTLEKRLGVRLLHRSTRRLALTEEGS 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 E RK+L+++E +S+ G L +S GR+ V+P F +HP LK+ Sbjct: 64 VYLEHCRKMLNELEHAESALSAGHNKVTGHLIVSAPASFGRQHVAPYAQEFLEQHPGLKM 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAA 186 L DR +DLV EG D+ IR+G +P+ + ++ ++RV+C + Y KKHG P L Sbjct: 124 SFNLTDRVVDLVQEGYDMGIRIGGNIDPNFVAIKLAANKRVVCGTREYFKKHGKPKTLDD 183 Query: 187 LRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIW 246 L H CL + W +V+ G L N GE++H+W +G GI RS+W Sbjct: 184 LANHNCLSFNLQGGQQRGWYFNYRGKTVSVRAQGSLDCNDGELLHRWMTEGLGIAWRSVW 243 Query: 247 DVADSLKRGRLVRVLPQY-FQEADLCAVYPLQLKNSAKVRECVRFLQ 292 ++ L+ G L VL Y E D+ AVYP Q AKVR + L+ Sbjct: 244 EIQRQLESGMLETVLDDYAIPEYDIMAVYPQQRNVPAKVRLFISHLK 290 >gi|152980095|ref|YP_001353263.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 157 bits (398), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 2/294 (0%) Query: 5 PLLEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTED 64 P +EDL LF A + +ARE+ +PA S + LE ALG RLF R+TRS+ +T D Sbjct: 4 PRIEDLMLFVRAADCGGLSAAARELDIAPAAASAALKRLEAALGARLFVRSTRSLRLTTD 63 Query: 65 GGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPEL 124 G AR +L V++ +V+ + G L +S LGR V+ P L F ++HP + Sbjct: 64 GERYLVHARAVLLAVDEGAASVARDAQTIGGDLSLSIPSDLGRNVMLPWLDEFQAQHPAI 123 Query: 125 KIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILP-SQRVLCASPAYLKKHGAPAD 183 ++++ + DR DL + ID+ IR G + + + ++P ++RVLCASPAY K+H P Sbjct: 124 RLRIRISDRLADLYRQTIDVAIRYGEPEDSGMVALPLVPDNRRVLCASPAYFKRHPLPKK 183 Query: 184 LAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILR 243 + L+ H CL + W K ETV V G S+ G+++ +WA+ G+G+ + Sbjct: 184 PSDLQSHNCLRFVLGDAIHERWDFWRNKKMETVVVDGDRISDDGDLVRRWALAGNGLAYK 243 Query: 244 SIWDVADSLKRGRLVRVLPQYFQE-ADLCAVYPLQLKNSAKVRECVRFLQKHLD 296 S DV+ LK+GRL+ LP Y E A L V +L S V FL++ L+ Sbjct: 244 SRLDVSQDLKKGRLLAALPNYQGELAPLNLVCAHRLMLSPAVVSLRDFLRQRLE 297 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 681,540 Number of extensions: 27186 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 29 Length of query: 304 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 221 Effective length of database: 914,170 Effective search space: 202031570 Effective search space used: 202031570 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)