BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1307.p (302 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 134 6e-33 gi|152982492|ref|YP_001352911.1| LysR family transcriptional reg... 124 6e-30 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 101 5e-23 gi|152982201|ref|YP_001352928.1| LysR family transcriptional reg... 86 3e-18 gi|152982152|ref|YP_001355350.1| LysR family transcriptional reg... 80 1e-16 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 134 bits (338), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 153/283 (54%) Query: 3 INIETAELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLT 62 +N+ +L+AF+AVA S F AAE L IT ALS I LE+ L+ +LFDR TR V LT Sbjct: 1 MNLTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLT 60 Query: 63 PAGELFLVHAQAVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYARSHA 122 GE FL+ A+ V+ ELE+AV + + +R V VAC +A LL ++ +A+ H Sbjct: 61 EHGEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHP 120 Query: 123 NVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFQELTRERYLAVMPAQHPLAAH 182 +++ + D + + + + G+ DF V E+EI + + ++ +MP HPL Sbjct: 121 GIKLMLRDVAEESIKKRLLNGDVDFSVGTQLNPESEISELPIFSDHFVLLMPKGHPLTKQ 180 Query: 183 TTLSWKLLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPVIQYETNHVAAAVSLVAAGLGVA 242 T + + ++ +++++ SS R++++ R+ I YE + + +++V G+G+ Sbjct: 181 TRIPLQAISQYPVIAMAPSSSIRAVLEAHLKRLDITLNIAYEASFPSTIIAMVRNGMGIT 240 Query: 243 LLPELALRNAPYKGIVARPLTSPVLSRSMGLIMLKGRVLKPAA 285 +LP A + +GIV R +R++ L+ R L PAA Sbjct: 241 ILPANAHQLTSTQGIVVRNFGKSNFTRTVCTFQLRNRSLSPAA 283 >gi|152982492|ref|YP_001352911.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 124 bits (311), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 88/294 (29%), Positives = 147/294 (50%) Query: 3 INIETAELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLT 62 +NI +L+AF+ VA F AAE L ++ +LS + +LE L RLFDR TRR+ LT Sbjct: 1 MNITLRQLRAFVTVAETGKFTLAAELLGVSQSSLSLLVRDLENLLGLRLFDRHTRRLELT 60 Query: 63 PAGELFLVHAQAVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYARSHA 122 AG L AQ + +L V++ +A ++ VT+A A ++P +LK + R + Sbjct: 61 DAGHDLLPVAQKTLMDLLSVVENSRDLLALKKGRVTIAAGSLHAATVIPDLLKSFNRRYP 120 Query: 123 NVRVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFQELTRERYLAVMPAQHPLAAH 182 +RV + D + V E + G D G+ + + Q + R++Y +M +H L Sbjct: 121 GIRVIVEDVAERQVRELIVAGTVDVGIGMTLDGDNSMLAQVIGRDKYAVLMHKEHQLMRK 180 Query: 183 TTLSWKLLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPVIQYETNHVAAAVSLVAAGLGVA 242 T++W+ +A + + L S R+ +D +R+ YE +V AG+GVA Sbjct: 181 KTITWQDIAATQPILLKPPSLIRTYLDQHLARVGITLTPAYEVALPWTMTGMVRAGVGVA 240 Query: 243 LLPELALRNAPYKGIVARPLTSPVLSRSMGLIMLKGRVLKPAAATLAQALRDAL 296 ++ L A G+ R +++PV+ R + ++ G L PAA +L L + L Sbjct: 241 IVTTGVLPVAERMGLELRTISAPVIERELAVLTRAGYPLSPAAQSLRTHLLEEL 294 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 101 bits (252), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 77/289 (26%), Positives = 135/289 (46%), Gaps = 3/289 (1%) Query: 5 IETAELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLTPA 64 +E L+ F+A A+ SF A+E L IT P LS +I+ +E L +LFDR R V LT A Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 65 GELFLVHAQAVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYARSHANV 124 GELF V+A+ + E++ + ++ + + VT + S LP +L + + + + Sbjct: 61 GELFQVYAKRALLEVDAGLDALNELENLKHGRVTFGVLSSFGTFHLPPILADFNKVYPGI 120 Query: 125 RVRIIDESAADVLESVRKGEADFGVNFIGAQEAEIDFQELTRERYLAVMPAQHPLAAHTT 184 ++ ++ + ++ E + G+ FGV + + +I+ + L V+ HPL Sbjct: 121 KITVLRLRSGEIEERLLDGDLHFGVAYAPSSTEQINVEPLFTVPLALVVGDHHPLVGSAG 180 Query: 185 LSWKLLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPVIQYETNHVAAAVSLVAAGLGVALL 244 ++ L +LV LS +R ++D P I E N + ++ V +L Sbjct: 181 ITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATVRHSSLATIL 240 Query: 245 PELALRNAPYKGIVARPLTSPVLSRSMGLIMLKGRVLKPAAATLAQALR 293 + P G+ PLT P ++ ++GL + L AA L +R Sbjct: 241 SANLVDEMP--GLHQVPLT-PTVTHTVGLFTRRNSHLSAAARALVDTIR 286 >gi|152982201|ref|YP_001352928.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 85.9 bits (211), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 82/293 (27%), Positives = 138/293 (47%), Gaps = 21/293 (7%) Query: 1 MRINIETAELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVS 60 MR ++E +L+ F+ VA SF A A L T +S I N+E + LFDRTTR+ + Sbjct: 1 MRFSLE--QLETFLLVAETGSFSATARKLGKTQSTVSAAIANIEIDMNLSLFDRTTRKPT 58 Query: 61 LTPAGELFLVHAQAVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRVLKPYARS 120 LT AG+ L+ A+AVME +A+++ + + N ++P VL + Sbjct: 59 LTAAGQKLLIEAEAVMERC-IALEAHADSLGDSNPAELTLAIEIPYNTVMP-VLSAFEAE 116 Query: 121 HANVRVRIIDESAADVLESVRKGEADFGVNFIG-AQEAEIDFQELTRERYLAVMPAQHPL 179 + + I + DV E V KGE D G+ F +E++F +L R + + HPL Sbjct: 117 FPFIDLTIRNPVYGDVSELVLKGEVDLGIAFAQPGYPSELNFTQLGRLVMVHITHPDHPL 176 Query: 180 AAHTTLSWKLLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPVIQ----YETNHVAAAVSLV 235 A +S+ L + ++ S+ + +++P ++ ++ A + +V Sbjct: 177 AKIEKVSFSDLHIHRHLAFSAHA----------NKLPTTEYLRATKVWQAESYLALIEMV 226 Query: 236 AAGLGVALLP-ELALRNAPYKGIVARPLTS-PVLSRSMGLIMLKGRVLKPAAA 286 AGLG A LP +L R +V L + P +G+ +L + +PAAA Sbjct: 227 RAGLGWATLPRQLIHRELEQGDLVELQLEAYPYTDWLVGVDLLWQKRRQPAAA 279 >gi|152982152|ref|YP_001355350.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 312 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/296 (28%), Positives = 132/296 (44%), Gaps = 21/296 (7%) Query: 9 ELQAFIAVARQSSFRAAAEGLFITPPALSRRIENLEQALQERLFDRTTRRVSLTPAGELF 68 +L + +AR+ F AAE ++ PALS + NLE L + R R TP GE Sbjct: 5 QLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGIAIVQRGQRFQGFTPEGERI 64 Query: 69 LVHAQAVMEELELAVKSVEQGMAQRREHVTVACVPSVANNLLPRV--LKPYARS-HANVR 125 L A+ + LE + + + + +P+ +P V L R+ HA++R Sbjct: 65 LDWARQTLAALEGLKQEASMSRVKLTGTLRLGAIPTT----MPIVSLLTGQCRAQHADLR 120 Query: 126 VRIIDESAADVLESVRKGEADFGVNFIGAQEAE-IDFQELTRERYLAVMPAQHPLAAHTT 184 ++ S +++ + E D G+ ++ Q Q L RERY+ + L Sbjct: 121 QLVLSLSTEEIMRRLDDFELDVGLTYLEDQRLNGFHVQPLYRERYMLLAREGAMLDGKAE 180 Query: 185 LSWKLLAGEKLVSLSSSSGNRSLIDNAFSRMPQRPVIQYETNHVAAAVSLVAAGLGVALL 244 +SW+ A L L+S NR ++D AF R P + ET+ V A S V +++ Sbjct: 181 ISWEEAAEFPLCLLTSHMQNRRIVDAAFRRAEVHPNVVVETDSVFALYSHVRHANLYSVV 240 Query: 245 PE-----LALRNAPYKGIVARPLTSPVLSRSMGLIMLKGRVLKP---AAATLAQAL 292 P LR+ +VA P+ P LSRS+GLI L P AA ++A+ + Sbjct: 241 PHSLLCLFELRDE----MVAIPIV-PELSRSIGLISLDHDPCSPIVVAARSIAEKI 291 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.131 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 501,975 Number of extensions: 16408 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 131 Number of HSP's successfully gapped: 33 Length of query: 302 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 219 Effective length of database: 914,170 Effective search space: 200203230 Effective search space used: 200203230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)