BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1305.p (434 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 166 2e-42 gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 166 3e-42 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 147 9e-37 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 145 4e-36 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 129 5e-31 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 166 bits (420), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/387 (29%), Positives = 194/387 (50%), Gaps = 4/387 (1%) Query: 8 AKRHSKLSTVLRVTSGNFLEMFDFFLYGFYASYI-SKTFFPSDNEFVSLILTFGTFGAGF 66 A++ S V G +E +DF +YG A+ + +K FFP+ + + + G++ GF Sbjct: 16 AEKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALGSYAVGF 75 Query: 67 LMRPLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTGRLL 126 L RPLG I G Y DR+GR+ L++TLA+M +GT LI +P Y IG+ APIL++T R++ Sbjct: 76 LARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLITLRII 135 Query: 127 QGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLSPLQIS 186 QG G E GG +V + E + +GFY S ++ + L+ VS+ + I Sbjct: 136 QGIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLVFSFVSK-MPEADIL 194 Query: 187 EWGWRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGE--IMTSIGQNWKIVVAGM 244 WGWRIPF + +++ IR++++E+ F K + + +M I ++ + + Sbjct: 195 SWGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVILKHPRTFFIAI 254 Query: 245 MMVVMTTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDRVGRR 304 + + Y++TV+ + L L S L + +P+ G LSD +GRR Sbjct: 255 GLKISEVSWVYMLTVFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPLFGYLSDVIGRR 314 Query: 305 PVLVAFTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVMPAHV 364 P+ L T+ A+P+ ++ +L + +S + E+ A+V Sbjct: 315 PLYFIGALFTIAFAFPLFLFMEMRTPEAVILTVVVAMSMGHGLMFAPEATYFPELFGANV 374 Query: 365 RTVGFSLAYSLATAIFGGFTPLVSTWL 391 R G S + +A AI GG +P+++T L Sbjct: 375 RYSGASFGFQVAAAIGGGLSPIIATAL 401 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 166 bits (419), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 202/392 (51%), Gaps = 7/392 (1%) Query: 10 RHSKLSTVLRVTS-GNFLEMFDFFLYGFYASYI-SKTFFPSDNEFVSLILTFGTFGAGFL 67 + SK+ T+ +S G +E +DF +YG A+ + +K FFP+ + + + GT+ GF Sbjct: 17 KKSKIGTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFF 76 Query: 68 MRPLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTGRLLQ 127 RPLG I G + DRVGR+ L++T+ IM +GT+LI +P Y IG+ AP+L++ R +Q Sbjct: 77 ARPLGGAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQ 136 Query: 128 GFSAGVELGGVSVYLAEMATPGNKGFYVSW-QSASQQAAIMASALIGYLVSQSLSPLQIS 186 G G E GG ++ + E A +GFY S Q ++A+ + + + L Sbjct: 137 GVGLGGEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGV--FAIVSKLPEADFL 194 Query: 187 EWGWRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGE--IMTSIGQNWKIVVAGM 244 WGWRIPF + ++V ++IR ++E+ FL K + ++ +I +N + + + Sbjct: 195 SWGWRIPFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAI 254 Query: 245 MMVVMTTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDRVGRR 304 + + Y++TV+ N L+L S L L +P+ G LSD+VGRR Sbjct: 255 GLKISEVSWVYILTVFIVVHATNNLQLPKSLILDGILYAALVEVITIPLFGLLSDKVGRR 314 Query: 305 PVLVAFTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVMPAHV 364 P+ + L T+ A+P+ L + S + + + LS + E+ A+V Sbjct: 315 PMYIWGALFTVALAFPLFILLDTRDSAIIIGVMIVALSLGHGFMFAPEATYFPELFGANV 374 Query: 365 RTVGFSLAYSLATAIFGGFTPLVSTWLIETSG 396 R G +L + +A AI GG +P+++T L+ G Sbjct: 375 RYSGATLGFQVAAAIGGGLSPIIATGLMAYFG 406 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 147 bits (372), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 124/434 (28%), Positives = 206/434 (47%), Gaps = 5/434 (1%) Query: 3 KTTQTAKRHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKT-FFPSDNEFVSLILTFGT 61 + + K++S + + G +E FDF++Y A + T FFPS N ++ + T Sbjct: 4 RNAGSEKKNSPATVLFASLIGTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLAT 63 Query: 62 FGAGFLMRPLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVL 121 F F RP+G+ + G Y DR+GR+ L+ L M + T++I +P Y IG AP+L+ Sbjct: 64 FAIAFFARPVGSAVFGHYGDRIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLA 123 Query: 122 TGRLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLS 181 R QG G E GG + E A PG +Y + S I L+S++L+ Sbjct: 124 LCRFGQGLGLGGEWGGAVLLATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLT 183 Query: 182 PLQISEWGWRIPFFIGCMIVPAIFIIRRSLQETEEF--LARKRHPSFGEIMTSIGQNWKI 239 Q +GWRIPF ++V +R + ET F + K I T ++ ++ Sbjct: 184 NEQFFSYGWRIPFIASAVLVLVGLYVRLKITETPVFQKVLDKNERVKVPIATIFREHSRV 243 Query: 240 VVAGMMMVVMTTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSD 299 +V G ++ T V FYL+TV+ ++G L + + LI+ + +PI L+D Sbjct: 244 LVLGTIIATATFVLFYLMTVFALSWGTTGLGYTRKEFLILQLFAVVFFALTIPISALLAD 303 Query: 300 RVGRRPVLVAFTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEV 359 + GRR ++ ++ +L + + V+ + L L+ + +Y G L+E+ Sbjct: 304 KYGRRITMILVSIAIMLFGFLISPMFVAHDAIGVTFFLSLGLALMGMTY-GPLGTMLSEL 362 Query: 360 MPAHVRTVGFSLAYSLATAIFGGFTPLVSTWLIETSGDKAAPGYWMSFAAVCGLIATLVL 419 P +R G SL ++L + P +TWL G GY++S A + LIA L++ Sbjct: 363 FPTEIRYTGVSLTFNLGGIVGASLAPYAATWLATNYGLHYV-GYYLSGATLLTLIALLMV 421 Query: 420 YRGKGATAAALTSS 433 + K T +ALT S Sbjct: 422 GKQKSITESALTPS 435 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 145 bits (366), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 5/327 (1%) Query: 4 TTQTAKRHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTFG 63 TT + + + + G E +DF+LYG A+ I+K FF + + I F Sbjct: 6 TTDRSITPEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFALLAFA 65 Query: 64 AGFLMRPLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTG 123 AGF++RP GAI+ G D +GR+ +VT+ IM T ++ +P YA+IG+AAPI+++ Sbjct: 66 AGFIVRPFGAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPIILIIL 125 Query: 124 RLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLSPL 183 R+LQG + G E GG + Y+AE A G +G + SW + + S L+ ++ Sbjct: 126 RILQGLALGGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTRTAMGEE 185 Query: 184 QISEWGWRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRH--PSFGEIMTSIGQ--NWKI 239 ++WGWRIPF + ++ IR S+ E+ FL K S + + + N KI Sbjct: 186 AFADWGWRIPFLVSVFLLGISVWIRLSMNESPAFLKMKSEGKASKAPLTEAFAKWGNLKI 245 Query: 240 VVAGMM-MVVMTTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALS 298 V+ ++ + V +Y Y F LK+ + I+ L + I G+LS Sbjct: 246 VILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANILIAASLLLATPFFVIFGSLS 305 Query: 299 DRVGRRPVLVAFTLLTLLTAYPVMSWL 325 D++GR+P+++A L+ LT +P+ + L Sbjct: 306 DKIGRKPIIMAGCLIAALTYFPIFNAL 332 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/334 (30%), Positives = 168/334 (50%), Gaps = 23/334 (6%) Query: 7 TAKRHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTFGAGF 66 TAK ++ VL T G E +DFF+YG A ++S FP DN +L+ + G AGF Sbjct: 15 TAKEERQV--VLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAALLASLGALAAGF 72 Query: 67 LMRPLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTGRLL 126 ++RP+GA++ G DR+GR+ ++T+ +M T LI F+P YA++G AA I ++ RL+ Sbjct: 73 VIRPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLV 132 Query: 127 QGFSAGVELGGVSVYLAEMATPGNKGFYVSW-QSASQQAAIMASALIGYLVSQ-SLSPLQ 184 QG + G E GG +Y+AE + P +G W Q S I++ A+I L +Q ++ Sbjct: 133 QGLAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVI--LGTQATMDMAS 190 Query: 185 ISEWGWRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGEIMTSIGQN----WK-- 238 EWGWR+PF I ++ +R L E+ F K G + + ++ W Sbjct: 191 FKEWGWRVPFIISIAMLIFSVYVRAKLHESPVFTRLKAQ---GRLSKNPVRDTFFKWPSL 247 Query: 239 --IVVAGMMMVVMTTVSFYLITVYTPTFGKNVLKLSASDS---LIVTFCVGLSNFCWLPI 293 I++A + +++ Y F + + L + + F +G F + Sbjct: 248 KMILLALFGVTAGQGATYFTGQFYVMIFLQQAVMLDQRTVYTLICIGFLIGAPAFVFF-- 305 Query: 294 MGALSDRVGRRPVLVAFTLLTLLTAYPVMSWLVS 327 G LSDR+GR+ +++A + L P+ + L+ Sbjct: 306 -GWLSDRLGRKWIMMAGLFIAALCYRPMFASLLE 338 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 956,474 Number of extensions: 38334 Number of successful extensions: 239 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 216 Number of HSP's successfully gapped: 8 Length of query: 434 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 348 Effective length of database: 903,079 Effective search space: 314271492 Effective search space used: 314271492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)