BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1304.p (553 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 469 e-133 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 461 e-131 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 456 e-129 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 429 e-121 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 428 e-121 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 469 bits (1207), Expect = e-133, Method: Compositional matrix adjust. Identities = 267/511 (52%), Positives = 364/511 (71%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 + NLK+G RL L FG ++ LL + LA + L+ ++ DRYP+ +LAN + + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 62 SENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQALR 121 ++ A MRN LL+ + + E+ I K ++ L L+ + SE+GR++ A +QA R Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 122 AAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQAA 181 + + + F++LAS G +A LL +R Q Y+A + I +++M++SG +A Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 182 DQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAGAR 241 + Q L++ +++AV + FA ATRS+TRP+ AV +A++VADG+L I ++ Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 242 DEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEETA 301 DE GQLL+AL+ MN L +IV VR G +TIA+AS +IA GNLDLSSRTEQQA SLEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 302 AAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDIIG 361 ++MEELTSTV+QNA+NA+Q+++LA AS VA R G VV +VV TM I+ ++++IVDIIG Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDSVA 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI DSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 422 QVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETTQQ 481 +V IG RLV+ AG+TM+EVV SV RV+ I+ EI+ A+Q+Q GIEQ+NQA+ MD+ TQQ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 482 NAALVEQAAAAAQSLQDQSQRLRELVGVFRL 512 NAALVE+AAAAA+SLQ Q+ L ++VGVF+L Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 461 bits (1185), Expect = e-131, Method: Compositional matrix adjust. Identities = 274/550 (49%), Positives = 363/550 (66%), Gaps = 16/550 (2%) Query: 1 MIANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLR 60 MIAN+K+ +L L FG+V LL IT L+ L L+ + I +DRYP+ +LAN V + Sbjct: 3 MIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIE 62 Query: 61 ISENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQAL 120 +++ A +R+++L D ++ + V+ + + E L +L+A +E+ + + Sbjct: 63 VNKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVA 122 Query: 121 RAAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQA 180 R Y + LQLA G T +A L Q +Y L + +M +G A Sbjct: 123 RDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAA 182 Query: 181 ADQYHQKTLIMLAMA----MLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQI 236 + Q I+ +A +L++AVG WW TRS+TRP+ AV VA++VA G+L + Sbjct: 183 SATSVQARTIINILAGISLLLSIAVG----WWVTRSITRPLNTAVGVARRVAQGDLSGPV 238 Query: 237 QAGARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGS 296 +E+GQL+ AL+ MN +L IV VR+G TIA AS EIA GN+DLSSRTEQQA S Sbjct: 239 FVKTTNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASS 298 Query: 297 LEETAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRI 356 LEETA+AMEELTSTVR+NADNAQQA++LAA A+ VA + G VV +V++TM I+ +S++I Sbjct: 299 LEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKI 358 Query: 357 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALI 416 DI GVID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSATAA EIKALI Sbjct: 359 ADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALI 418 Query: 417 DDSVAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMD 476 DDSVA+VD G +LV+QAG T+ EVV SVG +S IV IS A+Q+Q GIEQV QAI +D Sbjct: 419 DDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQID 478 Query: 477 ETTQQNAALVEQAAAAAQSLQDQSQRLRELVGVFRLQQEPPLVLFQTDEVSAAAVA-PLP 535 E TQQNAALVEQ+AAAAQSL++Q+ +L +LV +F+L + Q+ SAA A L Sbjct: 479 EGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLDR-------QSVATSAAPAAGKLH 531 Query: 536 RYSTSVAISP 545 +TS A+ P Sbjct: 532 LVTTSTALLP 541 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 456 bits (1174), Expect = e-129, Method: Compositional matrix adjust. Identities = 271/535 (50%), Positives = 360/535 (67%), Gaps = 1/535 (0%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 + NLK+G RL L FG V+ +L + +A L L + DRYP+ + A+ + + Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 62 SENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQALR 121 +E A MRN LL+ D Q+ E+ I KG I E L +L + SE+GR + R Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 122 AAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQAA 181 + + +F+ L + G +A LL +R Q Y+ L + S +M ++G+ A Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 182 DQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAGAR 241 + ++ ++++AV + + ATRS+TRP+ AV +A++VADG+L I ++ Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 242 DEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEETA 301 DE GQLL+AL+ MN L RIV VR G +TIA ASS+IA GNLDLSSRTE+QA SLEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 302 AAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDIIG 361 ++MEELTSTV+QNADNA+Q+++LA AS VA R G VV QVV TM I+ ++ +IVDIIG Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDSVA 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 422 QVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETTQQ 481 +V+ G RLV AG+TM EVV SV RV+ I+GEI+ A+Q+Q GIEQ+NQA+ MD+ TQQ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 482 NAALVEQAAAAAQSLQDQSQRLRELVGVFRLQQEPPLVLFQTDEVSAAAVAPLPR 536 NAALVE+AAAAA+SLQDQ+ L ++V VF+L + L T V+A A P+ + Sbjct: 481 NAALVEEAAAAAESLQDQANNLSQVVSVFKLDAN-AVALQATSRVAAPASRPVSK 534 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 429 bits (1103), Expect = e-121, Method: Compositional matrix adjust. Identities = 255/523 (48%), Positives = 355/523 (67%), Gaps = 8/523 (1%) Query: 1 MIANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLR 60 +N+K+GARL LGFG+VL L I A I L + TR ++E + + +D Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSD-WAA 61 Query: 61 ISENASAMRNLLLLDD-HQQLTEEVALIAKGEAAIG-EDLSRLQARLSSEQGRKSFAEIQ 118 I++ AS R + + L + A A ++ E + +L+ L+++Q ++ +A+I Sbjct: 62 ITK-ASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLNTDQEKELYAKIL 120 Query: 119 ALRAAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQ 178 +R ++ G++ ++L + G +AA+ + D + ++ + + M+ Sbjct: 121 DVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMDAGTA 180 Query: 179 QAADQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQA 238 Q +D T ++ ++ + +A G AW T +TRP++ AV+ A++VA G+L + I+A Sbjct: 181 QLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKA 240 Query: 239 GARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLE 298 ++DE GQLL AL+ MN L RIV +VR G ETI AS+EIA GNLDLSSRTEQQA SLE Sbjct: 241 ESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLE 300 Query: 299 ETAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVD 358 ETA++MEELTSTV+QNADNA+QA++LA AS VA + G+VV QVV TM I+ +SR+IVD Sbjct: 301 ETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVD 360 Query: 359 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDD 418 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIKALI D Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGD 420 Query: 419 SVAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDET 478 SV +VD G +LV +AG+TM E+V S+ RV+ I+GEI+ A+Q+Q GIEQ+NQAI MD Sbjct: 421 SVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHV 480 Query: 479 TQQNAALVEQAAAAAQSLQDQSQRLRELVGVFRLQQ----EPP 517 TQQNA+LVE+AAAAA+S+QDQ+++L ++VG F+L PP Sbjct: 481 TQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPP 523 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 428 bits (1101), Expect = e-121, Method: Compositional matrix adjust. Identities = 273/549 (49%), Positives = 367/549 (66%), Gaps = 10/549 (1%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 I N+++GARL +GFG + L+A + LA+ +++ + Q+V+ + + A + + Sbjct: 3 ILNVRIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKAEAA--ATIDV 60 Query: 62 SENASAMRNLLLLDDHQ--QLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQA 119 + A+A RN+ LL + + ++ A IAK + AI E + L + +++G+ E + Sbjct: 61 TTRANARRNMELLMETESAKVAALFADIAKNKKAIDEAVVVLDKLIYTDKGKALMQEFKE 120 Query: 120 LRAAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQ 179 R Y + +L + +A Q+LL D + AV +M+E G Sbjct: 121 ARGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVEERGAT 180 Query: 180 AADQYHQKTLIMLAMAMLAVAVGG-CFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQA 238 AA +M+ + LA AVGG A+W T S+T+P+ AV++AQ VA G+L I+A Sbjct: 181 AAGHIDAAIQMMMVLGALA-AVGGIALAYWITHSITKPLHEAVKIAQTVAAGDLTSVIEA 239 Query: 239 GARDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLE 298 +DE GQLL AL+ MNGSL RIV +VR E IA AS++IA GN+DLSSRTE+QA SLE Sbjct: 240 KYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLE 299 Query: 299 ETAAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVD 358 ETA++MEELT TVRQNADNA+QA++LA AS+VA++ G+VV QVV TM I+ ++++I D Sbjct: 300 ETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIAD 359 Query: 359 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDD 418 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKEIK LI D Sbjct: 360 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGD 419 Query: 419 SVAQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDET 478 SV +V+ G RLV+ AGSTMQEVV SV RV+ I+GEI+ A+Q+Q TGIEQ+NQA+ MD Sbjct: 420 SVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSV 479 Query: 479 TQQNAALVEQAAAAAQSLQDQSQRLRELVGVFRLQQEPPL-VLFQTDEVSAAAVAPLPRY 537 TQQNAALVEQAAAAA SLQ Q+ L ++VGVF+L L VL T + A V+ LP+ Sbjct: 480 TQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKLHHSEALHVLPATPK---ATVSVLPQK 536 Query: 538 STSVAISPQ 546 + +V I+ + Sbjct: 537 AAAVQIANK 545 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.127 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 779,761 Number of extensions: 23960 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 21 Length of query: 553 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 465 Effective length of database: 895,685 Effective search space: 416493525 Effective search space used: 416493525 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)