BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1302.p (315 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxyg... 258 3e-70 gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxyg... 227 6e-61 gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxyg... 199 2e-52 gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [... 199 3e-52 gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta s... 171 4e-44 >gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 327 Score = 258 bits (659), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 152/321 (47%), Positives = 193/321 (60%), Gaps = 15/321 (4%) Query: 8 VRVQAMRFEAQGVISVELGLPEEGE-LPPFEAGAHIDLHLGNGLVRSYSLSNSPTERHRY 66 V V+A+R EA+ + S EL P GE LP AGAHID+HL NGLVR YSL + P E Y Sbjct: 9 VWVRAIRIEAEQIRSFEL-CPLAGERLPAAAAGAHIDVHLPNGLVRQYSLLH-PGESKAY 66 Query: 67 VVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGIGITPISCM 126 ++GV D SRGGS Y+HE ++ G L+IS PRN+FPL E A SVLIAGGIGITPI M Sbjct: 67 MIGVNRDPVSRGGSSYLHEAVKPGDVLTISVPRNNFPLHEEAAHSVLIAGGIGITPIFSM 126 Query: 127 YHHLRAQGKEVVLHYCARSRREAAFTRQLLGQPGVS------SHFDDEAGCAPDLRAVLS 180 L G+ L+YC R+ AAF +L + + FD G A L Sbjct: 127 VQRLNQIGRAWTLYYCTRTEERAAFLDELKTLAATTETGNLHTVFDQVPGNQMLNLAELV 186 Query: 181 AYPQQ-----AHFYCCGPTPMLNAFESLCEELDLPHVHIERFAADKLAA-LPSGSYVAEL 234 + + AHFYCCGP +L F+ + VH+E F+A +A+ + + ++ L Sbjct: 187 QHSEAEHAGAAHFYCCGPGMLLQGFQQATATVAAERVHVEYFSAPAVASNVAAKTFSVTL 246 Query: 235 ARSKASVTVPAGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVLSKAERA 294 ARS + +PA +S+L+ LL G+ V SCREGVCG+CET VL GE EHRD VLS AERA Sbjct: 247 ARSGQTFQIPADQSILEVLLSKGVSVLSSCREGVCGSCETAVLAGEPEHRDAVLSAAERA 306 Query: 295 AGKTMMVCVSGCKGARLVLDL 315 +TMM+CVS CKG L LDL Sbjct: 307 DNRTMMLCVSRCKGTSLTLDL 327 >gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 319 Score = 227 bits (579), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 135/317 (42%), Positives = 178/317 (56%), Gaps = 8/317 (2%) Query: 6 LSVRVQAMRFEAQGVISVELGLPEEGELPPFEAGAHIDLHLGNGLVRSYSLSNSPTERHR 65 L+VRV + EA + S EL LP F G+HID+H+G GL+R YSL N P E R Sbjct: 4 LTVRVHKITQEACDIKSFELRSVSGEALPAFTPGSHIDVHIGEGLIRQYSLCNGPDEPDR 63 Query: 66 YVVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGIGITPISC 125 Y++ V + +SRGGS+ +HE +R G + ISAPRN+FPLE++ +L+AGGIG+TP+ Sbjct: 64 YLIAVKKEVTSRGGSQAMHESIREGDQIKISAPRNNFPLEQSQGPYLLLAGGIGVTPVLS 123 Query: 126 MYHHLRAQGKEVVLHYCARSRREAAFTRQLLGQPGVSSHFDDEAGCAPD-----LRAVLS 180 M HL AQG E L Y RS AF LL +P P+ LR +L Sbjct: 124 MARHLLAQGVEFELQYFTRSIAHTAF-HALLSEPEFQGRIKFHYALEPEGLRAYLRKLLW 182 Query: 181 AYPQQAHFYCCGPTPMLNAFESLCEELDLPH-VHIERFAADKLA-ALPSGSYVAELARSK 238 YP+ Y CGP ++ ES P VH+E F+AD L+ A S+ LAR+ Sbjct: 183 HYPENGSLYLCGPRVFMDLVESTAAATWPPEAVHLEYFSADPLSLAGEQESFEVRLARTG 242 Query: 239 ASVTVPAGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVLSKAERAAGKT 298 + VPAG + +AL GI ++ SC +GVCG C T VLEG +HRD LS AE+ + Sbjct: 243 GTYAVPAGMPITEALAAHGIHIDTSCEQGVCGTCLTGVLEGTPDHRDVYLSDAEKKSCDK 302 Query: 299 MMVCVSGCKGARLVLDL 315 +M CVS K LVLDL Sbjct: 303 IMPCVSRAKSPLLVLDL 319 >gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 321 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/319 (41%), Positives = 185/319 (57%), Gaps = 10/319 (3%) Query: 6 LSVRVQAMRFEAQGVISVEL--GLPEEGELPPFEAGAHIDLHLGNGLVRSYSLSNSPTER 63 + VRV++ A+ V + EL E LP EAGAHID+HL NGLVR YSL++ T Sbjct: 4 MQVRVKSKWQCAEEVAAFELVNADDENAPLPAAEAGAHIDVHLPNGLVRQYSLTDCRTGA 63 Query: 64 HRYVVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGIGITPI 123 YV+GV + +SRGGS +HE + G L IS PRN+FPL++A+ ++LIAGGIGITP+ Sbjct: 64 CSYVIGVKREPNSRGGSAAMHELVMQGDVLQISLPRNNFPLQKASGPTLLIAGGIGITPL 123 Query: 124 SCMYHHLR---AQGKEVVLHYCARSRREAAFTRQL--LGQPGVSSHFDDEAGCAPDLRAV 178 M L A ++ LHY RS AAF++++ L Q + D A +R + Sbjct: 124 LAMARALAADPACREKYALHYFCRSPLHAAFSKEIAALQQADGMVYGADADETAKHIRQL 183 Query: 179 LSAYPQQAHFYCCGPTPMLNAFESLCEELDLPH--VHIERFAADKLAALPSGSYVAELAR 236 L P+ AH Y CGP PM+ E P +H+E F ++++ + A Sbjct: 184 LQQRPEGAHVYTCGPGPMIATVVDTARECGWPEDAIHVEYF-SNQVDHGGERPFRVRCAG 242 Query: 237 SKASVTVPAGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVLSKAERAAG 296 SK V G+S+++A +AG+ + SC +GVCG C T VL G+ EHRD L+ AE+A+G Sbjct: 243 SKLEFQVAVGQSIVEAAAEAGLAIATSCEQGVCGTCLTNVLSGQPEHRDLYLTDAEKASG 302 Query: 297 KTMMVCVSGCKGARLVLDL 315 K M++CVS C+G LVLDL Sbjct: 303 KQMLLCVSRCRGDELVLDL 321 >gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [Janthinobacterium sp. Marseille] Length = 580 Score = 199 bits (505), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 162/311 (52%), Gaps = 20/311 (6%) Query: 16 EAQGVISVELGLPEEGELPPFEAGAHIDLHLGNGLVRSYSLSNSPTERHRYVVGVLHDRS 75 E+ GV++ EL G+LPP +AGAHI+L +GLVR YS+ N+PTER +GV + Sbjct: 279 ESDGVMAFEL-RSISGKLPPMQAGAHINLRTPSGLVRQYSIVNAPTERATLTIGVKLEPD 337 Query: 76 SRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGIGITPISCMYHHLRAQGK 135 SRGGS +H G L RN FPL + VLIAGGIGITP+ M L A GK Sbjct: 338 SRGGSASMHASALPGTHLEFVPTRNTFPLLDTPKYPVLIAGGIGITPLVSMAQALHAAGK 397 Query: 136 EVVLHYCARSRREAAFTRQLLGQPGVSSHFDDE----AGCAPD-----LRAVLSAYPQQA 186 + LHY RS +F ++ + F D+ A C P L VL+ Q Sbjct: 398 DFRLHYFVRSDEHVSFASRM-------AAFQDKLVLHAACTPQETKSILDQVLTQSSQPQ 450 Query: 187 HFYCCGPTPMLNAFESLCEELDLP--HVHIERFAADKLAALPSGSYVAELARSKASVTVP 244 Y CGP PML + + +P V E F DK + +L R+ ++TVP Sbjct: 451 IVYACGPGPMLTTIRACTQAAGMPDADVRFEIFRNDKDFG-DGKPFTVKLKRNGQTITVP 509 Query: 245 AGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVLSKAERAAGKTMMVCVS 304 G++LL AL GI VE SC +G+CG+C T+V G EHRD L+ E+AA MM CVS Sbjct: 510 RGETLLAALKRNGIPVEASCEQGICGSCLTRVSSGVPEHRDSYLTPQEKAANTCMMACVS 569 Query: 305 GCKGARLVLDL 315 L LDL Sbjct: 570 RAISEELELDL 580 >gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta subunit [Janthinobacterium sp. Marseille] Length = 329 Score = 171 bits (434), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 120/323 (37%), Positives = 169/323 (52%), Gaps = 18/323 (5%) Query: 6 LSVRVQAMRFEAQGVISVELGLPEEGELPPFEAGAHIDLHL----GNGLVRSYSLSNSPT 61 ++V V +R + + L + LP + AGAHI + + G+ RSYSL + Sbjct: 12 ITVVVSEIRALTPTIKAFVLHSTDGTALPAYTAGAHIRVQVILPGGDADERSYSLIDDSV 71 Query: 62 E---RHRYVVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGI 118 R Y + V + +GGS ++H L VG+ LSI P+N FPL+ +A +VLIAGGI Sbjct: 72 GSECRSYYRIAVQREAKGKGGSAFMH-GLEVGSHLSIRPPKNDFPLDASARHNVLIAGGI 130 Query: 119 GITPISCMYHHLRAQGKEVVLHYCARSRREAAFTRQLLGQPGVSSHFDDEAGCAP----D 174 GITPI M + L+A G+ HY RS AF + + +FD G P Sbjct: 131 GITPILAMAYALQAGGRSFEFHYGTRSPDLMAFRDVVETFRNAALYFD---GGDPRRGLQ 187 Query: 175 LRAVLSAYPQQAHFYCCGPTPMLNAFESLCEELDL--PHVHIERFAADKLAALPSGSYVA 232 L A+L+ H Y CGP +++A + + HVH E F + A ++ Sbjct: 188 LEALLAHPANGKHVYVCGPRGLIDAVIATAKHYGWADDHVHFELFNS-PAAQGGDTAFEV 246 Query: 233 ELARSKASVTVPAGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVLSKAE 292 EL S ++ VP KS+LD +L AG ++ + C+ G CG C T VLEG +HRD L + E Sbjct: 247 ELRASGKTLQVPVDKSILDVILAAGCDLMYDCKRGECGMCATAVLEGIPDHRDYNLPEDE 306 Query: 293 RAAGKTMMVCVSGCKGARLVLDL 315 RAAGK M +CVS K ARLVLD+ Sbjct: 307 RAAGKVMCICVSRAKSARLVLDI 329 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 674,568 Number of extensions: 26881 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 7 Length of query: 315 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 232 Effective length of database: 914,170 Effective search space: 212087440 Effective search space used: 212087440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)