BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1301.p (349 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979928|ref|YP_001352913.1| vanillate monooxygenase, alpha ... 97 1e-21 gi|152981997|ref|YP_001354194.1| hypothetical protein mma_2504 [... 68 7e-13 gi|152981999|ref|YP_001353364.1| hypothetical protein mma_1674 [... 61 1e-10 gi|152981998|ref|YP_001351914.1| hypothetical protein mma_0224 [... 55 7e-09 >gi|152979928|ref|YP_001352913.1| vanillate monooxygenase, alpha subunit [Janthinobacterium sp. Marseille] Length = 358 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 15/182 (8%) Query: 20 LKDLWYPICPSEFVAEKPVSLRRLGKKFVFWREPSGQLHALEDHCPHRGAPLSMGIPMGD 79 +++ WY S+ V + ++ R LG+ + +R+ G AL D CPH+ APLS+G GD Sbjct: 5 IRNAWYVAAWSKEVGRQYLTRRILGEPVLMYRKEDGSPVALLDRCPHKLAPLSLGELKGD 64 Query: 80 RIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAIFLYNSLEDIDTPPP 139 + CGYHG+Q G VPG P ++ + F + E A++++ + P Sbjct: 65 IVECGYHGLQFDCSGTCVRVPGQP--QIPPTAQVKSFPLVERYNAVWIWMGEATLANPDD 122 Query: 140 LRLPEELTSP-------EYSHFLCYTEWKGDYRYVLDNVMDPMHGTFLHKQSHSMAEGDN 192 + E P +Y HF K +Y + DN++DP H T++HK + A G+N Sbjct: 123 IVEVERYQMPGWDLIDGQYLHF------KSNYLNITDNLVDPAHTTYVHKNTIGNAAGEN 176 Query: 193 TA 194 A Sbjct: 177 VA 178 >gi|152981997|ref|YP_001354194.1| hypothetical protein mma_2504 [Janthinobacterium sp. Marseille] Length = 354 Score = 68.2 bits (165), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 81/351 (23%), Positives = 142/351 (40%), Gaps = 32/351 (9%) Query: 6 TAAHDAVDAVLAVGLKDLWYPICPSEFVAEKPVSLRRLGKKFVFWREPSGQLHALEDHCP 65 T HD + L L+ W+P+ + + + P+++ L + V R +G + AL+ CP Sbjct: 12 TGPHDPANHPLYRALRRFWHPVAYASELGDTPLAVTLLDQSLVLARL-NGVVTALDSRCP 70 Query: 66 HRGAPLSMGIPMGDRIACGYHGVQVRFDGVVTSVPGSPGCKLEGAKATRRFHVTEAAGAI 125 H+G L++G + I C YHG + G VP + ++H E G I Sbjct: 71 HKGTSLALGQIVDGTIECPYHGWRYDDGGKCVRVPAREELCDVLKASVAKYHAAEHVGII 130 Query: 126 FLYNSLEDIDTPPPLRLPE--ELTSPEYSHFLCYT-EWKGDYRYVLDNVMDPMHGTFLH- 181 ++ +LE+ P P+ E EY+ + +W L+N +D H +F+H Sbjct: 131 WV--ALEE----PLYAFPDFPEFEDAEYNVLQGTSYDWATSSPRRLENFVDFAHFSFVHD 184 Query: 182 ----KQSHSMAEGDNT---------ASFGIRETDIGFVFEKEGQRDVNFD-WTEWGDTGL 227 +S+ E + G++E +G E G D + E+ T Sbjct: 185 GTIGSRSNPRVEPVDVWREGPVLRFNRSGVKEPGVGLKKELLGITDALIEPVNEYHVTMP 244 Query: 228 HWMRLAIPYPKTGGPGGSFVIIGSYTPIVENIAAVFHWRCRKL-TGWQRDTWRFLYRNRL 286 H + L +P G +V+ S +P+ F W R T + D + + + + Sbjct: 245 HTVHLKRIFPN----GKRYVLFMSASPVTATQTRSFWWIARDFGTDTKHDAFFRDFEDEV 300 Query: 287 EARHWNVLEQDRVV-LELMEPDANQREM-LYQHDMGIVRLRRHLRGLAKAQ 335 + ++E R + L D QRE + D+ + RR L L A+ Sbjct: 301 LGQDKPIIESQRPLWFNLAGGDPAQRETPMRGADVVTIEYRRWLFELMNAK 351 >gi|152981999|ref|YP_001353364.1| hypothetical protein mma_1674 [Janthinobacterium sp. Marseille] Length = 231 Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 44 GKKFVFWREPSGQLHALEDHCPHRGAPLSMGIPMGDRIACGYHGVQVRFDGVVTSVPGSP 103 G++ WR +G++ + CPHRG +MG + D+++CGYHG + G T +P P Sbjct: 32 GQELALWRNAAGEIQVWANRCPHRGTRFTMGRIVDDQLSCGYHGWRFGSGGQCTYIPAHP 91 Query: 104 GCKLEGAKATRRFHVTEAAGAIFLYNSLEDIDTPPPLRLPEELTSPEYSHFLC 156 + F E G I + SL +T P + L PE C Sbjct: 92 KLPPPKTVCAKTFQAVERYGMI--WTSLGAPETEVPQL--QALADPEQQSLFC 140 >gi|152981998|ref|YP_001351914.1| hypothetical protein mma_0224 [Janthinobacterium sp. Marseille] Length = 365 Score = 55.1 bits (131), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%) Query: 20 LKDLWYPICPSEFVAEK------PVSLRRLGKKFVFWREPSGQLHALEDHCPHRGAPLSM 73 L+ W+P+C + E P++++ LG+ V + G++ A+ D C HR A LS Sbjct: 13 LRHFWHPVCTLKEFTESAPEGVGPMAVKLLGEDIVLAKL-DGRIAAMRDRCAHRFAKLSK 71 Query: 74 GI----PMGDRIACGYHGVQVRFDGVVTSVPGSP 103 G GDR+ C YHG Q DG ++P P Sbjct: 72 GCVKQGEAGDRLECPYHGWQYDKDGACRTIPACP 105 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.448 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 763,152 Number of extensions: 32413 Number of successful extensions: 71 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 4 Length of query: 349 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 265 Effective length of database: 910,473 Effective search space: 241275345 Effective search space used: 241275345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)